Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1156 ATGGCTATGGGCGAAAGTTTACAAACAAGGGCAAGAGAAAGAGTTACAATGCATCGACAAGGGAGAGTAAAATTTGACGGTGAGTTGATTGAGGCGGCTGCGTTGGAGGTTCAGAATGAGGCGTCTGATGAGAAATTGGTGAAGTTGCTGGGGCTGACACATGGTTATGATTCGTTCCGGGATGGACAGTTGGAGGCAATTAGGATGGTGCTCGAGGGGAAATCAACAATGCTGGTTTTGCCAACGGGTGCTGGAAAATCACTGTGTTATCAGTTACCAGCACTGGTGTTACCAGGGATCACGCTGGTTGTGAGTCCGCTGGTAGCTTTGATGATTGATCAACTTAAACAGCTGCCTCCAATGATTCCGGGTGGTCTTTTGTCTAGCAGTCAGTCAGCTGAAGAGACTTCTGAAACACTACGACAGCTTCGAGAAGGAACTATCAAGGTTCTTTTTGTTTCACCTGAGAGGTTTCTAAATGCAGAGTTTTTGTCGATAGTTTCAGCCGGTCCACCTATATCACTTGTAGTGGTGGATGAAGCTCACTGTGTGTCTGAGTGGTCACATAATTTTCGGCCTTCATATATGAGGCTGAGGGCATCCTTACTTCATGCTGTGCTTAATGCTAAATGCATTCTTGCAATGACTGCAACTGCAACGAGCAGAACCCTGCATGCTGTTATGCATGCTCTGGAAATTCCAGCAGCCAATCTCATCCAGAAAGCCCAATTAAGGGACAATTTACAGCTATCGGTATCTCTAAGTAAAAATAGGCAATCTCCTCCCTTTATTGAGGTTCAGAGTATCATTATTTACTGCAAATTTCAGTCTGAGACTGATTCAATAAGCAAATACTTATGTGATAACAATATCTCTGCAAAGAGTTACCACAGTGGCATACCAGCAAAGGACCGAAGTCGTACACAGGAGTTGTTTTGTTCCAACAAGATAAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGCCTCAATAAGAGTGATGTTGGAGCTGTTATACATTTCAGCTTACCAGAAAGCTTGGAGGAGTATGTTCAGGAGATTGGACGGGCTGGACGAGATGGGAATTTGTCTTATTGTCATCTTCTCTTTGATGATATTACATATTTCAAGCTTCGCAGTCTGATGCACAGTGATGGAGTGGATGAATATGCGGTAAATAGATTTCTATCCCAGGTTTTCAGCAATGGCATGGGCTCACCTGGGAAAGTTCATTCGATAGTCAAAGAAGCTGCATCTCGTAAATTTGATATGAAAGAAGAGGTGATGCTTACAATCTTAACGCACTTGGAGTTGGGTGAAGTACAATACTTGTCTTTACTTCCGCCATTAAATGTAACTTGCAGCTTAAACTTCCATAAGACTACCCCTGCTTTGCTTGCTGACTGGGATATTGTGGTTGCAGCAATTCTAAAGAAGTCTGAAACTAAACAAGGGCACTATGTGTTTGACATACCCACTGTGGCAAATAGCATTGGGATTACAACTATTGATATTTTAAATCAGTTGCAGAACCTGAAGTTGAAAGGAGAAATAACATATGAGATGAAGGATCCAGCCTATTGTTACACAATTGTGGATGTTCCTGGAGATCTTTGTTGCCTGGCAGCACATCTTACAAAATGGTTATCCGAGGTCGAAAGTTGTAAGGTACAAAAATTAGATACGATGTTTAATGCTGCTGTCTCAGCAGTGGAACTATGTGAGAAGAAGTGCGGCTGCCTTGGTGCCCAGCATACACCATGCTTGCAAAGAAAGATTTCAGATTACTTTAGTGGAGATGGTAATGGCGACATTCCTAATAAGATGGATCAAAGCAGCCCATTTTTGCGAGCAGATATAAAGGTATTTCTGCAGAGCAATTCACAGGTCAAGTTTACTCCCAGAGCTGTTGCAAGGATAATGCATGGCATTGCTAGCCCAGCCTATCCTTCTGCAACTTGGTCCAGAACTCATTTCTGGGGTAGGTACATGCAGATGGACTTCCAAGTGGTAATGAAGGCAGCAAAGGCAGAGCTCATGAATTTTGTTGGAAAGGATGCACTCTAG 2067 43.15 MAMGESLQTRARERVTMHRQGRVKFDGELIEAAALEVQNEASDEKLVKLLGLTHGYDSFRDGQLEAIRMVLEGKSTMLVLPTGAGKSLCYQLPALVLPGITLVVSPLVALMIDQLKQLPPMIPGGLLSSSQSAEETSETLRQLREGTIKVLFVSPERFLNAEFLSIVSAGPPISLVVVDEAHCVSEWSHNFRPSYMRLRASLLHAVLNAKCILAMTATATSRTLHAVMHALEIPAANLIQKAQLRDNLQLSVSLSKNRQSPPFIEVQSIIIYCKFQSETDSISKYLCDNNISAKSYHSGIPAKDRSRTQELFCSNKIRVVVATVAFGMGLNKSDVGAVIHFSLPESLEEYVQEIGRAGRDGNLSYCHLLFDDITYFKLRSLMHSDGVDEYAVNRFLSQVFSNGMGSPGKVHSIVKEAASRKFDMKEEVMLTILTHLELGEVQYLSLLPPLNVTCSLNFHKTTPALLADWDIVVAAILKKSETKQGHYVFDIPTVANSIGITTIDILNQLQNLKLKGEITYEMKDPAYCYTIVDVPGDLCCLAAHLTKWLSEVESCKVQKLDTMFNAAVSAVELCEKKCGCLGAQHTPCLQRKISDYFSGDGNGDIPNKMDQSSPFLRADIKVFLQSNSQVKFTPRAVARIMHGIASPAYPSATWSRTHFWGRYMQMDFQVVMKAAKAELMNFVGKDAL* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19639324 19647921 - Vvi1g1156 Vvi1g1156 770356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1156 688 Pfam DEAD/DEAH box helicase 61 224 IPR011545 GO:0003676|GO:0005524
Vvi1g1156 688 Gene3D - 242 424 IPR027417 -
Vvi1g1156 688 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 52 385 IPR004589 GO:0004386|GO:0006310
Vvi1g1156 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 380 IPR027417 -
Vvi1g1156 688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 237 IPR014001 -
Vvi1g1156 688 Gene3D - 30 237 IPR027417 -
Vvi1g1156 688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 403 IPR001650 -
Vvi1g1156 688 PANTHER ATP-DEPENDENT DNA HELICASE Q4 16 612 - -
Vvi1g1156 688 CDD SF2_C_RecQ 245 370 - -
Vvi1g1156 688 CDD DEXHc_RecQ4-like 47 240 - -
Vvi1g1156 688 PANTHER DNA HELICASE RECQ FAMILY MEMBER 16 612 - -
Vvi1g1156 688 SMART helicmild6 280 361 IPR001650 -
Vvi1g1156 688 SMART ultradead3 55 241 IPR014001 -
Vvi1g1156 688 Pfam Helicase conserved C-terminal domain 267 360 IPR001650 -
Vvi1g1156 688 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 174 183 IPR002464 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1156 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4] - vvi:100256355 1313.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1156 . . . . . . . . . . . . . . . Cpe09g00572 . . . . . . . . . . . . . . . . . . . . . . . Blo06g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011110 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31