Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1157 ATGATAGGATTCGATCGGGTCCTTGTCCATCGTCTCCAGTCTTGCAAAGACAACTACCAAACCCTAGACGCCATCATCAACCATCTCTGCAGGAAATACCCGGAGTACAGTCGCAAGAAGCGCCAGCCTTTCACCAGACTCGTCCAACAAGCCCTAGAGTCATTGCAGCAACCCCACCGCAGCACCAAGAAAAAGAAGAACGAACCCTTGACCTCAAATCTCGATGATGACAACCAAGATTCCAGTTGTGATAGCGAAGATGGCGCGGTGTCGACGTCCGAAAATGCAGATGCCATCTATGAGGAGAAGGTGGAGCCGGAGTGTGATTTGATGAAGGAGATGATGCGAGCGACGTACGCCAAGTCGGCTTCGAAAAATGTGGAGTCCAAAAATGAAAATCCGAGACTGATTGAAGACAAGAATATCGAATTGGAGGTCGGTGATAAGCAGAAGAGTAAGATTGGTATGGTAGAAGGAGGTGGAGTTGGGAAGGGATTGGGGAAGGGCTCGAAGAAAGAAGTGAAGGGTTCTGTTTCGACCGGTGTTGAGGTGAGTGGAAAGGATGGACCGATGTTTAGTGACCTTGGAGGGATGAAAAGCGTGGTGGAGGACTTGAAGATGGAAGTGATTGTTCCGCTGTATTATCCAGAATTGCCTCGTTGGTTGGGAGTACGCCCAATGGCGGGAATTTTGTTGCACGGGCCGCCTGGTTGTGGAAAGACCAAGTTGGCTCATGCCATTGCTAATGAGACTAAAGTTCCATTTTACAAGATATCAGCGACTGAGGTGGTCTCTGGTGTATCAGGTGCATCAGAAGAGAATATTAGGGAGCTTTTCTCAAAAGCATACAGGACCGCACCATCAATTGTTTTCATTGATGAAATTGATGCAATTGCCTCAAAAAGAGAAAACCTAAATAGGGAGATGGAGCGACGGATTGTGACACAGTTGATGACTTGCATGGATGAATCCAACAGACTTGTACAACCTGCTGATGGAGATAAAGAATCAGAAATCTCTCATCACAAACCTGGTTATGTACTTGTTATAGGAGCCACTAATAGGCCTGATGCTGTTGACCCTGCACTAAGGAGGCCAGGGCGTTTTGATCGTGAGATTGCTTTAGGTGTTCCGGATGAAAGTGCTAGGGCTGATATTCTTTCAGTAATTACACGCAATCTTAGACTTGAGGGTTCTTTCGATCTTGCAAAATTAGCTAGGTCCACACCAGGGTTTGTTGGAGCTGATTTGGCAGCACTGGCCAACAAGGCTGGTAACCTTGCCATGAAGAGAATTATAGACAGAAGAAAGTTTGAGCTGTCTAGAGAACTAACAGATGAAGAACATATTGAAGATTGGTGGAGGCAGCCATGGTTGCCTGAAGAGATGGAAAAACTTAGCATTACAATGGCAGATTTTGAGGAAGCAGCTAAAATGGTTCAGCCCTCTTCTAGAAGAGAAGGATTCTCTACCATTCCAAATGTAAGGTGGGAAGATGTTGGAGGGCTTGATTTTTTAAGGCAGGAATTTGACCGTTACATAGTTAGGCGTATTAAATACCCTGAGGATTATGAGGAATTTGGTGTGGATTTAGAGACAGGATTTTTGCTTTATGGGCCTCCTGGCTGTGGTAAAACACTAATTGCCAAGGCTGTTGCAAATGAAGCAGGGGCCAATTTCATACATATTAAGGGCCCTGAACTTCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTAGGACGCTATTTAGTCGAGCAAGGACATGTTCTCCATGCATACTATTTTTTGATGAGGTGGATGCTTTGACAACAAAGCGTGGGAAGGAAGGGGGATGGGTTGTTGAGCGGCTTCTAAACCAGCTATTGATAGAGTTAGATGGTGCAGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACTTCTTTATGTACCTTTGCCTAGTCCGGATGAGCGTGGGTTGATCCTAAAAGCTCTTGCTAGGAAGAAGCCTATAGATGCCAGTGTGGATTTGATTGCCATAGGACAGAAAGAGGCTTGTAACAATCTAAGTGGGGCTGATCTTTCTGCACTGATGAATGAAGCAGCCATGGCTGCTCTGGAAGAGAAACTCGCAGATTGCAGTTCAGGTGCAATTTCATGGACTATAAATGCAAAACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGA 2310 45.5 MIGFDRVLVHRLQSCKDNYQTLDAIINHLCRKYPEYSRKKRQPFTRLVQQALESLQQPHRSTKKKKNEPLTSNLDDDNQDSSCDSEDGAVSTSENADAIYEEKVEPECDLMKEMMRATYAKSASKNVESKNENPRLIEDKNIELEVGDKQKSKIGMVEGGGVGKGLGKGSKKEVKGSVSTGVEVSGKDGPMFSDLGGMKSVVEDLKMEVIVPLYYPELPRWLGVRPMAGILLHGPPGCGKTKLAHAIANETKVPFYKISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLNREMERRIVTQLMTCMDESNRLVQPADGDKESEISHHKPGYVLVIGATNRPDAVDPALRRPGRFDREIALGVPDESARADILSVITRNLRLEGSFDLAKLARSTPGFVGADLAALANKAGNLAMKRIIDRRKFELSRELTDEEHIEDWWRQPWLPEEMEKLSITMADFEEAAKMVQPSSRREGFSTIPNVRWEDVGGLDFLRQEFDRYIVRRIKYPEDYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERGLILKALARKKPIDASVDLIAIGQKEACNNLSGADLSALMNEAAMAALEEKLADCSSGAISWTINAKHFDQALGKISPSVSNKQKHFYQVLSESFKAE* 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19653031 19663798 + Vvi1g1157 Vvi1g1157 770357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1157 769 Gene3D - 666 745 - -
Vvi1g1157 769 MobiDBLite consensus disorder prediction 58 73 - -
Vvi1g1157 769 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
Vvi1g1157 769 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 56 765 - -
Vvi1g1157 769 PANTHER AAA-FAMILY ATPASE 56 765 - -
Vvi1g1157 769 Gene3D - 2 62 IPR038100 -
Vvi1g1157 769 MobiDBLite consensus disorder prediction 74 92 - -
Vvi1g1157 769 CDD AAA 225 376 - -
Vvi1g1157 769 Pfam Nucleolin binding domain 5 57 IPR031996 -
Vvi1g1157 769 MobiDBLite consensus disorder prediction 53 103 - -
Vvi1g1157 769 CDD AAA 534 665 - -
Vvi1g1157 769 Gene3D - 493 759 IPR027417 -
Vvi1g1157 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 766 IPR027417 -
Vvi1g1157 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 486 IPR027417 -
Vvi1g1157 769 MobiDBLite consensus disorder prediction 155 182 - -
Vvi1g1157 769 Pfam ATPase family associated with various cellular activities (AAA) 230 375 IPR003959 GO:0005524|GO:0016887
Vvi1g1157 769 Pfam ATPase family associated with various cellular activities (AAA) 536 664 IPR003959 GO:0005524|GO:0016887
Vvi1g1157 769 Gene3D - 184 376 IPR027417 -
Vvi1g1157 769 Pfam AAA+ lid domain 400 434 IPR041569 -
Vvi1g1157 769 Pfam AAA+ lid domain 688 724 IPR041569 -
Vvi1g1157 769 Gene3D - 378 487 - -
Vvi1g1157 769 ProSitePatterns AAA-protein family signature. 635 653 IPR003960 GO:0005524|GO:0016887
Vvi1g1157 769 SMART AAA_5 531 667 IPR003593 -
Vvi1g1157 769 SMART AAA_5 226 379 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1157 K14571 RIX7, NVL; ribosome biogenesis ATPase - vvi:100261441 1364.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003358 1 1 1 1 1 1 2 1 1 2 1 1 2 2 1 2 1 3 2 1 1 1 4 1 2 3 2 1 2 1 46