Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g116 ATGTCATGGCATCAACACTGTGTTTCAGTCCACAGCAACCCATCTCTCACAATCTCTTGGAACAAGAAAGCTTTCAATCTTAGAGCATCTCTTTTCGATCATCCTCTTGCAAGCAGGATCATGGTTACAAATTTATCATATGCTACCAGCAAAAGTAGTCTGCAGGAGGAGTTCTCAAAATTCGGCCAGATAGTTGAAGTTGACGTTGTCAAAGACAAAGCTGCAAAGAGGCCAAGAGGCTACGCATTCATCCAATATACCTCTCAAGATCATGCCATGCTTGCCCTAGAAAATATGGATCACAAGTATTTGGATGGCAGGGTGGTCTGCGTGGAACTCGCAAAACCTGGGAAAAATGATTTTGGTAGATACCCTAGAACCTGCGGACCACCCAGCAAGAAGGAAGACGAGACGAGAGAGTGA 423 44.68 MSWHQHCVSVHSNPSLTISWNKKAFNLRASLFDHPLASRIMVTNLSYATSKSSLQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAMLALENMDHKYLDGRVVCVELAKPGKNDFGRYPRTCGPPSKKEDETRE* 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1128472 1132261 - Vvi1g116 Vvi1g116 769316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g116 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 108 IPR000504 GO:0003723
Vvi1g116 140 CDD RRM_SF 40 112 - -
Vvi1g116 140 Gene3D - 28 139 IPR012677 -
Vvi1g116 140 SUPERFAMILY RNA-binding domain, RBD 38 128 IPR035979 GO:0003676
Vvi1g116 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vvi1g116 140 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 15 135 - -
Vvi1g116 140 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 15 135 - -
Vvi1g116 140 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g116 - - vvi:100254274 285.034