Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1166 ATGGAGGAGGAGATCATGTTGGAGTTCAAAAAGATAGGATTTTCGTTCCACAAAGAGGAAGAAGAAGAAGTGCTGAAGAAATGTCTCACGTTTTGTATAAATTACAAGCTCAGCCCGTCCGATCTGGTTTCGAGCTGGGAAGTTTACTATCTCAACAGGCAACTAGACGAATCAGTTGTTGGAAATGCTCTGATGGATGGGTTTTTACTGCACCTCCAAAATGAGCAGAAAGAAGCAGTTATTAAAGAGGAACCCCATTTGCATATCTATTCAAGTAACGATGTTGATATGATTTTAAGTGATGAACATGAAGAGATAAAAGAAGATATCCTTGGTACTCCTTCAGACAGATCTGGAAGGCACCATGCTGATCCCTTTGATTCAGCCCAGCGAACAAATGGGAACAGCTCCTCTTATGGAAAACCATCAAACCATGTGACACCATTCGGCAAACGAACAAGCAAGTTTGTAGTGCAATTAACAGTCAATAACCCACCCAGTGCAGAGAATGGAAAAAATGAGAATAAGTTTGAGAATGTTGATGATGATATTATTAGGAGAGTACAACCCAGCAAACGATGTTCCTTGCTAGTTCATGGATCGCGGCCTGGACCAGGTTGCAGGTTCATGTATGACAGGATTGAAGACAGGTTTAACTCTCTCGAAAACCGTATCAAAAAACATACAACAGCGCTTGTTGCCACTGGACTGTATAAGGAACCAACAGATCCTACAGTTGCTTCACAGAAAAGTGTATTTGCAACTGGCATGATCTGTTGTGATGGAGAAGGTCGTTTGAATGAGAAGTCTATCTTGTTGCAAAGCAGTGTTCAGCATTCTGGAGGGCAACGGGTACGTCTTGACCTATCAAAATTGAATCAGTTTTCCATTTTTCCAGGCCAGGTGGTGGGCATAGAGGGGCACAATCCCAGTGGACACTGTTTGATTGCATCAAAAATATTAGATTCTATTCCTGTTTCTGCTCCTACTGATGTGGATTTGCATCCTGCAAAGAAGCAGGCTCGGGATGAAGAGTTCCAGTCTGCTGATTCATCCCACAAGCTAGCAGAGCTATCATTGATGGTTGCAGCAGGCCCTTTTACCACAACTGACAACTTATTGTTTGAGCCTCTAACAGAGCTTCTAGCATATGCAAGAAGAAAGATGCCTCAGTTGCTTATACTGCTGGGACCATTTGTTGATTCTGAACATCCAGAGATTAGGAAAGGAACAGTGGACAGGAGCTTTGATGAAATATTTCATCTGGAAATTCTCAGAAGGTTACAAGATTATGTGGAATATATGGGTTCTGCAGCTCGTGTAATTCTTGTGCCATCTATACGAGATGCTAACCATGACTTTGTTTTTCCTCAGCCTGCTTTTAGTATTCATCCACCCGATCTCAAACATCAGATAACCAGTCTCACAAATCCAGGGATGTTTGATGCAAATGAGGTCAAGGTCGGGTGCTGCACAGTTGATGTTATCAAACAGCTCAGTGGAGAAATGATTTCACGAAATCCTACAGATGGGTCATCCAGGGATCGCATGACTACCATTGCAAACCATATTCTCAGCCAGCGCAGTTTCTATCCTTTATATCCACTGGCGGAAGGCATTCCTCTGGATTTCTCACTTGCTCCAGAAGCTCTTGAGGTCTCTACTATTCCCGATGTTCTCATCCTCCCATCAGATTTGGCTTCTTTTGTAAAGGTGCTATCCCTGGGTGGAAGAAATGAAGGGGAAGAGCTAGTGAAGTGCATTTGTGTGAATCCAGGAAGACTGGCCAAGGGTGAAGGTGGGGGTCACTTTGTGGAGCTTAACTACCAAGGGAGTCCAGACAAAACGAGTGCTTCAGTCATCCGCATATAG 1872 43.38 MEEEIMLEFKKIGFSFHKEEEEEVLKKCLTFCINYKLSPSDLVSSWEVYYLNRQLDESVVGNALMDGFLLHLQNEQKEAVIKEEPHLHIYSSNDVDMILSDEHEEIKEDILGTPSDRSGRHHADPFDSAQRTNGNSSSYGKPSNHVTPFGKRTSKFVVQLTVNNPPSAENGKNENKFENVDDDIIRRVQPSKRCSLLVHGSRPGPGCRFMYDRIEDRFNSLENRIKKHTTALVATGLYKEPTDPTVASQKSVFATGMICCDGEGRLNEKSILLQSSVQHSGGQRVRLDLSKLNQFSIFPGQVVGIEGHNPSGHCLIASKILDSIPVSAPTDVDLHPAKKQARDEEFQSADSSHKLAELSLMVAAGPFTTTDNLLFEPLTELLAYARRKMPQLLILLGPFVDSEHPEIRKGTVDRSFDEIFHLEILRRLQDYVEYMGSAARVILVPSIRDANHDFVFPQPAFSIHPPDLKHQITSLTNPGMFDANEVKVGCCTVDVIKQLSGEMISRNPTDGSSRDRMTTIANHILSQRSFYPLYPLAEGIPLDFSLAPEALEVSTIPDVLILPSDLASFVKVLSLGGRNEGEELVKCICVNPGRLAKGEGGGHFVELNYQGSPDKTSASVIRI* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19730784 19737152 - Vvi1g1166 Vvi1g1166 770366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1166 623 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 623 IPR016722 -
Vvi1g1166 623 Pfam DNA polymerase alpha/epsilon subunit B 361 571 IPR007185 GO:0003677|GO:0006260
Vvi1g1166 623 MobiDBLite consensus disorder prediction 128 149 - -
Vvi1g1166 623 PIRSF DNA_pol_alpha_2 1 621 IPR016722 -
Vvi1g1166 623 MobiDBLite consensus disorder prediction 111 149 - -
Vvi1g1166 623 Coils Coil 211 231 - -
Vvi1g1166 623 Gene3D - 1 66 IPR043034 -
Vvi1g1166 623 MobiDBLite consensus disorder prediction 111 127 - -
Vvi1g1166 623 Gene3D - 516 621 - -
Vvi1g1166 623 Gene3D - 339 507 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1166 K02321 - vvi:100257984 1236.86