Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1168 ATGTTTTCTCTGAGTGGTATGCCTTCAACTGCCTCAGTTTTATCAACATACACCACCTTTGCTGCATCAGCAATGCTGGTCCGGACTGTGGTGAGTGAAGTTGAGACCATGGCCAACCAGCTCATACCCCAACAACTCCGAGAGAAGATCGTTTCCAAACTTGGAGGCCTTCTTGGTAGTCACTCTTCTGAAATGGTCCTTGTCATTCAAGAGTTCAATGGGCTCTCTGTAAATCAAATTTATCAGGCTTCTGAACTCTATTTGCGCACCAAAATCACCCCCTCGGTCGGCCGGCTTAATGTTTCCAAAGGCCTGCGAGAGAAGAACCTCTCAGTCACTGTCAGCAAAGGAGAAATGGTTGTGGATAAGTCGGAACAGAGGTCAATTGAGCTCATTTTTCACAAGAAATACAAGGAGGTGGTCTTGAGCACATACCTGCCATATGTAATAGAAAGATCAAGAGCCATAAAAGAAGAAAACAAGGTGGTGAAGCTATGCTCACTAGGAAATTTCTCTGAAGATTACGATGGCCCTTGGGGATCAATCAATCTCAGCCATCCATGCACCTTTGACACATTAGCAATGGATCCGACGCTCAAGAAGGAACTGATTGCTGACTTGGACAGATTTGTGAGGAGAAGAGAGTTCTACCAGAAAGTGGGGAAGGCATGGAAACGAGGGTACTTGTTGTATGGCCCTCCAGGCACAGGGAAGTCGAGCTTGATTGCAGCCATGGCTAACTATCTCAAATTCAACATCTATGATTTGGAGCTTACAAGTCTCTGGAACAATTCAGACCTGAGAAGGCTGTTGGTCTCTACAGCAAATCGATCCATACTTGTCATCGAGGACATCGACTGTTCTGTTGAGTTGCAGAACCGACAAAATGGATCAGACAACAACACTGACAGCCAGTTAACTCTATCTGGGTTGCTTAATTTCATTGATGGACTATGGTCAAGCTGTGGTGATGAGAGGATCATCGTGTTCACAACAAATCATAAAGAAAGACTAGACCCTGCATTGTTGAGACCAGGGCGCATGGACATGCATATCCACATGTCCTACTGCACTCCCTCCGGATTCAAAATCCTAGCTGCCAACTACCTCAACATCAACACTCACCCTCTGTTTACTAAAATTGAGAGACTGATGACTGAGGTGGAGGTAACCCCAGCAGAGATTGCAGAAGAACTCTTGAAATGCGAAGAAGTCGATGTTGCTCTTGAAGGAATTATCAAATTCCTGGAAAGGAAGAAGATGCAGGTCGAACATGATGAAAAATCTAACGAGGGAGTAAAAGAAGTTGATGAACAAGAAGTGAGCAACGGGATTAAAGGAGATAAGATGGGTAGGACAGCTCTTAAATTTCTTTCAACCCTTCATGGTCAAATGCGAAGCATATTTTCCCTGACAAGTATGCCTTCAGCACCAACCGTTCTGTCAACATACACCACTTTTGCTGCATCAGCAATGCTGGTGCAGACCATGCTCAGTGAAATTCAGACCGCAATCACCCAGATCATACCTCTAAAACCAGGAGAAAATCTTGTCCTAGATTGGAAGCCTTCTTGCTCACCAGTCTCCGTTGCAACTCAAGAGTTTAGAAGACTGTTAGTCTCAATTAGGAACCAATCAATACTTGTGATTGAAGATATTGACTGCAGCAGTGAGCTGCAGGGCCAACAAGCTGAAGGACATAATCTAAATGACAGCCAGTTGATGTTATCCGAATTGCTTAATTCCATTGATGGGTTGTGGTCAAGCTGTGGTGATAAGCAGATAATCGTGCTCAACAACTATCACAAAGAAAGGCTAGACCCTGGATTGTTGAGACCAGGGTGCATGGACATGCATATCCACATGTCCTAA 1872 44.55 MFSLSGMPSTASVLSTYTTFAASAMLVRTVVSEVETMANQLIPQQLREKIVSKLGGLLGSHSSEMVLVIQEFNGLSVNQIYQASELYLRTKITPSVGRLNVSKGLREKNLSVTVSKGEMVVDKSEQRSIELIFHKKYKEVVLSTYLPYVIERSRAIKEENKVVKLCSLGNFSEDYDGPWGSINLSHPCTFDTLAMDPTLKKELIADLDRFVRRREFYQKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFNIYDLELTSLWNNSDLRRLLVSTANRSILVIEDIDCSVELQNRQNGSDNNTDSQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCTPSGFKILAANYLNINTHPLFTKIERLMTEVEVTPAEIAEELLKCEEVDVALEGIIKFLERKKMQVEHDEKSNEGVKEVDEQEVSNGIKGDKMGRTALKFLSTLHGQMRSIFSLTSMPSAPTVLSTYTTFAASAMLVQTMLSEIQTAITQIIPLKPGENLVLDWKPSCSPVSVATQEFRRLLVSIRNQSILVIEDIDCSSELQGQQAEGHNLNDSQLMLSELLNSIDGLWSSCGDKQIIVLNNYHKERLDPGLLRPGCMDMHIHMS* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19756000 19763729 - Vvi1g1168 Vvi1g1168 770368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1168 623 PANTHER - 470 511 - -
Vvi1g1168 623 PANTHER - 121 440 - -
Vvi1g1168 623 PANTHER - 3 123 - -
Vvi1g1168 623 PANTHER - 531 623 - -
Vvi1g1168 623 ProSitePatterns AAA-protein family signature. 326 344 IPR003960 GO:0005524|GO:0016887
Vvi1g1168 623 Pfam ATPase family associated with various cellular activities (AAA) 229 355 IPR003959 GO:0005524|GO:0016887
Vvi1g1168 623 PANTHER BCS1 AAA-TYPE ATPASE 121 440 - -
Vvi1g1168 623 PANTHER BCS1 AAA-TYPE ATPASE 531 623 - -
Vvi1g1168 623 PANTHER BCS1 AAA-TYPE ATPASE 3 123 - -
Vvi1g1168 623 PANTHER BCS1 AAA-TYPE ATPASE 470 511 - -
Vvi1g1168 623 Gene3D - 181 352 IPR027417 -
Vvi1g1168 623 CDD AAA 225 356 - -
Vvi1g1168 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 402 IPR027417 -
Vvi1g1168 623 Gene3D - 353 424 - -
Vvi1g1168 623 Gene3D - 493 623 IPR027417 -
Vvi1g1168 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 623 IPR027417 -
Vvi1g1168 623 SMART AAA_5 224 358 IPR003593 -
Vvi1g1168 623 Pfam Domain associated at C-terminal with AAA 42 123 IPR025753 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1168 - - K08900 vvi:100261340 864.759
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1168 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00220 Cam06g0239 Cec06g0239 Cco06g0234 Clacu06g0233 Cmu06g0229 Cre06g1000 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111