Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1169 ATGGCCGACCTAAACCCTAACCATTCTTCTTCTATTTATCCAAATACCGGCTTCTGCTCCAAAACCATGATCTACCACAGCCTCCGCCCCCACCCTCCCCTCCCCCCGGAAACCGCTCCTCTCTCCCTCTCCGACTACGTTTTTTCCCACCTTTCTACCTCCTCCGCGCCAGAAACCGCCGTCGCCTTCATCGACGCCACCACCGGCCGCAGCATTTCCTTTTCACAGCTTGTCCGCTTCTCCGAAACCCTAGCCGCCTCGCTCCAACGCCGGCTTGGCCTCACCAGAGGCGACTCTGCCTTGGTCATCTCCCCAAATTCGCTTCATGTGCCGGTTCTCTACTTCGCTCTCTTCTCCCTCGGCGTCATCGTCTCTCCTTCGAATCCGGCGAGTACTGAGTCCGAGATTTCCCGCCAAATCGAGCTATGCAAGCCGGTCATTGCCTTCGCGACTTCTTCTACCGCTCACAAGGTTCCATCCCTGAAATTCTCGACCGTGGTTCTCGACTCGCCGGAGTTTCACTCGATGATGACAGTTGAGACTGGGAATCTCCGCCGAGTTCGCGTTTCGCAGTCCGATCCTGCAATGATTCTTTACTCTTCGGGGACAACGGGGCGGGTGAAGGGCGTGGTTCTGACTCACCGGAACTGGATATCCGCGGTGGCGGGAGCGAATGTGCTTCGACAAGAGAGGGCGTCGCCGACGGTGACGATGTGTACGGTACCTTACTTTCATGTGTACGGATGTGGACTTTGTATGAGGGCGGTGGCGTTAGGGCAGAGCGTGGTAGCGATAGAGAGATTGAATGTGCGGTCGTTGATGTCGGCTGTTCAGGAGTTTAGGGTTACGCACTTGGCTGTGGCGCCGCCGGTGATTGTGATGATGGCAAACGGCGGCGATTTAGTGGACGGTTGTGATTTGAGGTCATTGGAAGCGGTGCTCTGTGGCGGAGCTCCGGTTAGTACGGCGGTGATCGAGAGGTTCAAGAAGCGGTTTCCGAACGTGCTGGTGACGCAGGCCTATGGGTTGACTGAAACAACAGGGGGAATCTCTAGAACAGTAGGTCTGGAAGAAAGCCAAAGACTAGGCGCATCAGGGCGTCTTATCCCATATTGCCAAGCTAAGATTGTTGATCCTGATACTGGCATTGCATTGCCTCCCTTGAGGACAGGGGAGCTTTGGGTTAGAGGTCCATCCATTATGAAGGGTTATGTTGGCAATGAAGAAGCAACAGCTGAAATTCTGGATTCTGAGGGATGGTTAAGAACAGGAGATATTTGTCATTTTGACAGAGACGGCTTCATATATGTTGTGGATAGGATTAAGGAATTGATCAAATACAAAGGCTACCAGGTTGCCCCTGCAGAGTTGGAACATCTGCTTCACTCGCATCCGGATACTGTAGAAGCAGCTGTGATTCCGTACCCTGATGCGCAAGCTGGTCAAGTACCCATGGCATTTGTGGTGAAGCGCCCCCAAAGCACCATTGATGAATCAGAAATCATGGATTTCATTGCCAAACAGGTGGCCCCATACAAGAAAATTAGACGGGTATCCTTCATTAATTCAATTCCGAAGAATGCTACTGGTAAGGTGTTGAGAAAGGACTTAATCAAGCTTGCATCATCAAGAAGTGGCTGTTCCAAGTTATGA 1653 52.39 MADLNPNHSSSIYPNTGFCSKTMIYHSLRPHPPLPPETAPLSLSDYVFSHLSTSSAPETAVAFIDATTGRSISFSQLVRFSETLAASLQRRLGLTRGDSALVISPNSLHVPVLYFALFSLGVIVSPSNPASTESEISRQIELCKPVIAFATSSTAHKVPSLKFSTVVLDSPEFHSMMTVETGNLRRVRVSQSDPAMILYSSGTTGRVKGVVLTHRNWISAVAGANVLRQERASPTVTMCTVPYFHVYGCGLCMRAVALGQSVVAIERLNVRSLMSAVQEFRVTHLAVAPPVIVMMANGGDLVDGCDLRSLEAVLCGGAPVSTAVIERFKKRFPNVLVTQAYGLTETTGGISRTVGLEESQRLGASGRLIPYCQAKIVDPDTGIALPPLRTGELWVRGPSIMKGYVGNEEATAEILDSEGWLRTGDICHFDRDGFIYVVDRIKELIKYKGYQVAPAELEHLLHSHPDTVEAAVIPYPDAQAGQVPMAFVVKRPQSTIDESEIMDFIAKQVAPYKKIRRVSFINSIPKNATGKVLRKDLIKLASSRSGCSKL* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19768991 19771314 + Vvi1g1169 Vvi1g1169 770369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1169 550 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 14 542 - -
Vvi1g1169 550 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Vvi1g1169 550 Gene3D - 24 442 IPR042099 -
Vvi1g1169 550 Pfam AMP-binding enzyme 59 447 IPR000873 -
Vvi1g1169 550 Gene3D - 443 545 IPR045851 -
Vvi1g1169 550 SUPERFAMILY Acetyl-CoA synthetase-like 27 542 - -
Vvi1g1169 550 CDD 4CL 35 537 - -
Vvi1g1169 550 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Vvi1g1169 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1169 - - - vvi:100266547 1071.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1169 Vvi14g1210 ECH
Vvi1g1169 Vvi17g149 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002494 1 2 2 1 2 2 2 1 2 2 1 2 2 2 2 2 2 4 2 2 2 1 2 4 2 1 2 2 1 4 59