Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1171 ATGAAGTTGAGTCCAAGAGAGGTGGACAAACTGCTTCTTCACAATGCTGGGTTTCTTGCCCAGAAGCGTCTTGCTTCTGGGCTAAGGCTCAATTACACTGAAGCCGTAGCCCTCATTGCCTCACAGATTTTGGCTTTTGTTCGTGAGGGTGAGAAGACTGTGGCGGAATTGATGGACATAGGGAAACAACTTTTGGGAAGGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAGGTTGAGGGAACATTTCCTGATGGGACAAAGTTAGTAACAGTTCATGATGCCATTGCCAGTGAAAATGGAAATCTGGATTTAGCTTTACATGGTTCTTTTCTTCCAGTTCCTTCAGTAGACAAGTTTCCTGACATGGAAGATGATAGAATTCCTGGTGAAATAAGATATGGAGGTGGAACTATTATGCTCAACTCTTGCAGGAAAGCAATAGTCCTCAGAGTCACCAACACTGGAGACAGGCCGATTCAGGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTACACGATTTGAGCCAGGGGAAACAAAAAGAGTCTCACTTGTAAGGATTGGAGGTAAGCAAGTGATCAGAGGAGGAAATTGCATTATCGACGGTCCTGTCGATGATACTAATATCACAGCTGTGATGGAATCCGAAAGCATGGTGAGATTTGGGCATTCAGAAGAAGCACATGTCAGTGAAGGTGTCATTGGAGAAGATCCTGATTTAGCAATAAGAATGTCTCATGAGGCATATGCTAACATGTATGGCCCCACCACTGGTGACAAAATTCGGCTTGGTGACACTGAATTATATGCTGAAATTGAAAGTGATTTTGCTGTCTATGGTGATGAATGTGTATTTGGAGGGGGAAAAGTTATAAGGGATGGAATGGGGCAGGCTTGTATGTATGCAGCAGCTGAATGTGTGGATACTGTCATCACAAATGCTGTGGTCATTGACTACACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGTCTTATTGTTTCTCTTGGAAAAGCAGGCAACCCAGATATTATGCATGGTGCACACATGATCATTGGGGTTAGCACCGAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGGCATCACAACATTAGTGGGCGGTGGAACGGGACCTGCTGATGGAACTCGTGCAACTACTTGTACGCCAGCAGCCTCACATATGAAATTTATGCTGCAATCAACTGATGACCTGCCACTGAATTTTGGTTTCACAGGAAAAGGGAACAGTGCCAAACCAGACGGGCTACATGAAATAATTAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGGTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGTGAAGGTGCTGGTGGTGGTCATGCTCCAGATATCATCAAAGTATGTGGTGTGAAAAATGTTCTACCCTCATCCACAAACCCAACACGGCCTTTCACTTCCAATACCATAGATGAGCACCTTGACATGCTGATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGGTGATAATTAGAACCTGGCAAACTGCTCACAAGATGAAGTTACAAAGAGGATCACTTGATGCTAGTGGAGTGGATAATGACAACCTCCGAATTAAACGATACATTGCAAAATATACTATAAATCCTGCAATAGCTAATGGGTTTTCACGATTTGTTGGCTCCATTGAGGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGGTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGGTTGCTGCAGAATGTGGAATAAAAACCCATTATGGACTCACAAAGAGGGTGGAAGCTGTTGGCAATGTGAGGAGACTAACCAAACTTGATATGAAGCTCAATGATGCTCTTCCTGTGATCACGGTGGATCCAGAGACTTACACAGTGACAGCAGATGGTGTGACTCTAAGCTGCCCTGCTGCCACTACAGTTCCCCTTTCTCGGAATTACTTCCTCTTTTAG 2508 44.66 MKLSPREVDKLLLHNAGFLAQKRLASGLRLNYTEAVALIASQILAFVREGEKTVAELMDIGKQLLGRRQVLPAVPHLLHTVQVEGTFPDGTKLVTVHDAIASENGNLDLALHGSFLPVPSVDKFPDMEDDRIPGEIRYGGGTIMLNSCRKAIVLRVTNTGDRPIQVGSHYHFIEVNPALVFDRRKAHGMRLNIPAGTATRFEPGETKRVSLVRIGGKQVIRGGNCIIDGPVDDTNITAVMESESMVRFGHSEEAHVSEGVIGEDPDLAIRMSHEAYANMYGPTTGDKIRLGDTELYAEIESDFAVYGDECVFGGGKVIRDGMGQACMYAAAECVDTVITNAVVIDYTGIFKADIGIKDGLIVSLGKAGNPDIMHGAHMIIGVSTEVIAGEGMIVTAGAIDCHVHFICPQLAYEAISSGITTLVGGGTGPADGTRATTCTPAASHMKFMLQSTDDLPLNFGFTGKGNSAKPDGLHEIIRAGAMGLKLHEDWGTTPAAIDNCLTVAEQYDIQVNIHTDTLNESGFVEHTIAAFKDRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKDIPEDVAFAESRIRAETIAAEDILHDMGAISIIASDSQAMGRIGEVIIRTWQTAHKMKLQRGSLDASGVDNDNLRIKRYIAKYTINPAIANGFSRFVGSIEVGKVADLVLWNPSFFGAKPEMVIKGGVIAWANMGDPNASIPTPEPVMMRPMFGAFGKAGSANSIAFVSKVAAECGIKTHYGLTKRVEAVGNVRRLTKLDMKLNDALPVITVDPETYTVTADGVTLSCPAATTVPLSRNYFLF* 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19784550 19799430 - Vvi1g1171 Vvi1g1171 770371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1171 835 TIGRFAM urease_beta: urease, beta subunit 132 232 IPR002019 GO:0035550|GO:0043419
Vvi1g1171 835 CDD Urease_beta 132 231 IPR002019 GO:0035550|GO:0043419
Vvi1g1171 835 SUPERFAMILY Composite domain of metallo-dependent hydrolases 691 745 IPR011059 GO:0016810
Vvi1g1171 835 Gene3D - 397 816 - -
Vvi1g1171 835 SUPERFAMILY Metallo-dependent hydrolases 397 835 IPR032466 -
Vvi1g1171 835 Hamap Urease subunit alpha [ureC]. 269 835 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151|GO:0043419
Vvi1g1171 835 PANTHER UREASE 1 835 - -
Vvi1g1171 835 Hamap Urease subunit beta [ureB]. 131 231 IPR002019 GO:0035550|GO:0043419
Vvi1g1171 835 TIGRFAM urease_alph: urease, alpha subunit 270 835 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 Gene3D Urease, subunit C, domain 1 269 748 IPR011059 GO:0016810
Vvi1g1171 835 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Vvi1g1171 835 ProSitePatterns Urease active site. 585 601 IPR017950 GO:0009039
Vvi1g1171 835 SUPERFAMILY Urease, beta-subunit 132 260 IPR036461 -
Vvi1g1171 835 ProSitePatterns Urease nickel ligands signature. 395 408 IPR029754 GO:0016151
Vvi1g1171 835 CDD Urease_gamma 4 100 IPR002026 GO:0016151|GO:0043419
Vvi1g1171 835 PIRSF Urease 1 835 IPR008221 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 Pfam Amidohydrolase family 393 721 IPR006680 GO:0016787
Vvi1g1171 835 Gene3D Urease, beta subunit 149 268 IPR036461 -
Vvi1g1171 835 TIGRFAM urease_gam: urease, gamma subunit 1 101 IPR002026 GO:0016151|GO:0043419
Vvi1g1171 835 Pfam Urease subunit beta-alpha linker domain 231 264 IPR040881 -
Vvi1g1171 835 PRINTS Urea amidohydrolase (urease) protein signature 563 580 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 PRINTS Urea amidohydrolase (urease) protein signature 602 618 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 PRINTS Urea amidohydrolase (urease) protein signature 669 684 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 PRINTS Urea amidohydrolase (urease) protein signature 695 708 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 CDD Urease_alpha 270 834 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1171 835 Pfam Urease beta subunit 133 229 IPR002019 GO:0035550|GO:0043419
Vvi1g1171 835 SUPERFAMILY Composite domain of metallo-dependent hydrolases 270 445 IPR011059 GO:0016810
Vvi1g1171 835 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Vvi1g1171 835 Pfam Urease alpha-subunit, N-terminal domain 270 387 IPR011612 -
Vvi1g1171 835 ProSiteProfiles Urease domain profile. 397 835 IPR017951 GO:0006807|GO:0009039|GO:0016151
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1171 K01427 URE; urease [EC:3.5.1.5] - vvi:100263023 1674.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49