Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1172 ATGGCTGTTCTTATGCTCAACAGACCATGGGGGACAAAGATCCAGAATACATCCTGTGAAGAAGGAAAATTCCTGCTTCTCCACCAGGGTGAGTTAAAAAGCTTTGAAAACACCGCCTCTTCTCACACCTACGTCACCGGACAGAGAGGGAGAGATTCGGAGAAGGGAATGGGTTCCTCGTCTGGAGTAGTATTGGAGGAAATACCTTCCGTTGATTTGATGACGGAGCTTCTCCGCCGCATGAAGTGCTCCTCCAAGCCTGACAAGCGTCTCATTCTCGTCGGTCCACCTGGATCTGGGAAGGGCACACAGTCACCCATTATTAAGGATGAGTACTGCTTGTGCCACTTGGCCACTGGTGATATGCTGAGAGTAGCTGTTGCTGCTAAAACTCCTCTAGGAATTAAAGCTAAAGAAGCTATGGATAAGGGAGAACTTGTAACTGATGACTTGGTTGTTGGAATAATTGATGAAGCAATGAAGAAGCCCTCATGTCAGAAAGGTTTCATTCTTGATGGGTTTCCAAGGACTGTTGTCCAAGCAGAAAAGCTAGATGAAATGCTTGCAAAGCAGGGAAATAAAATTGATAAGGTGCTTAACTTTGCAATTGACGATGCCATATTGGAGGAGAGGATCACTGGACGTTGGATCCACCCCTCAAGTGGTCGGACATACCACACAAAGTTTGCACCTCCCAAAGTTTCAGGTGTTGATGATGTTACTGGAGAGCCACTGATTCAACGAAAAGATGATACTCCTGAAGTTCTGAAGTCAAGGCTGGAGGCTTTTCACAGGCAAACTGAACCAGTTATTGATTATTATGCCAAAAAGAATGTCCTTGCCCAGCTTCATGCCGAGAAACCCCCAAAAGAGGTCTCTGCTGAGGTTCAGAAAGCTCTCTCTTAG 906 46.03 MAVLMLNRPWGTKIQNTSCEEGKFLLLHQGELKSFENTASSHTYVTGQRGRDSEKGMGSSSGVVLEEIPSVDLMTELLRRMKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRVAVAAKTPLGIKAKEAMDKGELVTDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAEKLDEMLAKQGNKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVSGVDDVTGEPLIQRKDDTPEVLKSRLEAFHRQTEPVIDYYAKKNVLAQLHAEKPPKEVSAEVQKALS* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19802032 19816465 - Vvi1g1172 Vvi1g1172 770372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1172 301 Pfam Adenylate kinase 93 278 - -
Vvi1g1172 301 Pfam Adenylate kinase, active site lid 215 250 IPR007862 GO:0004017
Vvi1g1172 301 TIGRFAM adk: adenylate kinase 90 300 IPR006259 GO:0004017|GO:0005524|GO:0016776
Vvi1g1172 301 ProSitePatterns Adenylate kinase signature. 169 180 IPR033690 -
Vvi1g1172 301 PANTHER ADENYLATE KINASE 4-LIKE 65 301 - -
Vvi1g1172 301 CDD ADK 90 292 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi1g1172 301 PRINTS Adenylate kinase signature 92 105 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi1g1172 301 PRINTS Adenylate kinase signature 120 134 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi1g1172 301 PRINTS Adenylate kinase signature 169 185 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi1g1172 301 PRINTS Adenylate kinase signature 248 263 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi1g1172 301 PRINTS Adenylate kinase signature 265 279 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi1g1172 301 Hamap Adenylate kinase [adk]. 89 301 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi1g1172 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 300 IPR027417 -
Vvi1g1172 301 Gene3D - 62 301 IPR027417 -
Vvi1g1172 301 PANTHER NUCLEOTIDE KINASE 65 301 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1172 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - vvi:100240759 487.648
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1172 Vvi17g143 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46