Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1173 ATGGCGAAGCTTCCAATTCTACAATTCGAGGAGAAGATCATCGATATCGTGGAACAAAACTCAGTGGTAGTAATAATCGGAGAGACCGGTTCCGGAAAGAGCACTCAGCTTTCTCAGATTTTGTACCGGCGGGGCTACACCAATTCCGGCAACGTTGCCGTCACTCAGCCCCGGCGAGTCGCCGCAGTTTCCGTGGCAAGGCGGGTAGCACAGGAACTGGGTGTTCAGCTTGGTGAGGAAGTGGGTTATGCCATTCGATTTGAAGATAGAACTTCAGAAAGAACACGTATTAAATACCTTACGGATGGAGTCCTCCTTCGTGAAAGTCTTTCTAACCCTGATCTCAGTCAGTATTCTGTAATTATATTGGATGAAGCTCATGAAAGAAGTCTAAACACGGACATATTATTGGGACTGATGAAAAGATTGGTTAAAATGCGTGCCTCCAATTTGAAGGTTCTAATCACTTCCGCCACTCTTGATGGTAGCAAAGTATCAAGATTTTTCTCAAACTGCCCCATACTTACCGTCCCAGGGAAATTATTCCCTGTTGAAATATTGTACAGCGCTGAGCTTCCTAAAAGCTATATCGAGTCTTCTTTGAAAACAGCTATTGATATACATGTTCGGGAACCAGAAGGTGATGTTTTAATATTCATGACTGGGCAGGATGATATAGAGAAGTTGGTAGTGAAGTTGGAGGAGAGAGTCCGAAGCTTGGAGGAAGGTTCTTGTATGGATGCCATAATCCTTCCCCTTCATGGTTCTTTACCACCCGAATTGCAGGCAAGTTTTTTTGTCCGTGTATTCAGTCCTCCACCTCCAAATTGCAGGCGATTTATTGTTGCCACAAACATAGCTGAAACTTCATTGACTGTTGATGGTGTTGTGTATGTTATTGATTCTGGTTATGTGAAGCAGCGGCAATACAACCCATTAACTGGCATGTATTCCCTTGATGTTGTTCAAATTAGCAAGGTACAAGCCAATCAACGTGCAGGAAGAGCCGGAAGAACACGTCCTGGGAAGTGCTACCGATTATACCCATCTATGGTTTACCATGATGACTTCCTGGATGTAACAGTTCCTGAAATACAGCGATCTTCTCTTGCTGGAAGTGTTCTTTATTTGAAATCATTAGATCTCCCTGATATTGATATTCTCAAATTTGATTTTCTTGATTCCCCTTCCTCTGAGTCTCTACAAGATGCTTTAAGGCAATTATATCTCATTGATGCTATTGATGAAAATGGATCAATTACAAGTGTTGGACGAACAATGGCTGAGCTTCCACTGGAATCTTCACTCTCAAGGATGTTAATGGAGGCAAATGAGTGTGGTTGCTTGTCCCAGGCTTTGACTGTTGCTGCTATGTTGTCAGCAGAAACAACATTGCTTCCTGGTCGAAGCAAGAGCACTGAGAAGAAAAGGAAACACACTCCAACAGACCTTCCTGATGGTTCTGGCTGGGGTGATCACATCCAGTTGCTACAGATCTTTGAGCAGTGGGATCAAACAGACTATGATCCAAATTGGTGCAAAGATCATGGTTTGCAGGTGCGAGGAATGATGTTTGTCAAAGATGTTCGGAAACAGTTGTCTCAGATAATGCAGAAAATGGCTAGAGGGTCGTTAGATGTACGAGCCAAAGAAAGATGGAAAGAAAGCCGACAAGACTACAAGAATTTGAGGAAGGCTTTGTGTGCAGGCTATGCAGGTCAGCTCGCTGAGAGAATGATTCATCATAATGGCTATAGAACTTTAGGATTGAAGTCCCAACTGGTTCAGGTGCATCCATCTTCTGTGCTGAGAGCAGACGAAGATGGAATGCTCCCAAACTATGTTTTGTACCATGAGCTCGTTGTTACCACACGTCCTTACATGCGCAATGTGTGTGCAGTAGAGATGTCATGGGTCATGCCCATTTTGAAGAAACTTGAGAACCTAAATATCAACAAACTCAGTGGTGGGTCCAATCAAGTTGAAGACAGGACTGAGGAGAAATCCTCGGACTCTCCAAAGAAATCTGTTGATGTTGCCAGGCCTCCTAATGACGCTGAAAGTAGAATACAGGCAGCAAGGGATCGTTTTATGGCCCGTAAAGCAAAGAGATAG 2115 43.69 MAKLPILQFEEKIIDIVEQNSVVVIIGETGSGKSTQLSQILYRRGYTNSGNVAVTQPRRVAAVSVARRVAQELGVQLGEEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSNPDLSQYSVIILDEAHERSLNTDILLGLMKRLVKMRASNLKVLITSATLDGSKVSRFFSNCPILTVPGKLFPVEILYSAELPKSYIESSLKTAIDIHVREPEGDVLIFMTGQDDIEKLVVKLEERVRSLEEGSCMDAIILPLHGSLPPELQASFFVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPLTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSMVYHDDFLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALRQLYLIDAIDENGSITSVGRTMAELPLESSLSRMLMEANECGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPTDLPDGSGWGDHIQLLQIFEQWDQTDYDPNWCKDHGLQVRGMMFVKDVRKQLSQIMQKMARGSLDVRAKERWKESRQDYKNLRKALCAGYAGQLAERMIHHNGYRTLGLKSQLVQVHPSSVLRADEDGMLPNYVLYHELVVTTRPYMRNVCAVEMSWVMPILKKLENLNINKLSGGSNQVEDRTEEKSSDSPKKSVDVARPPNDAESRIQAARDRFMARKAKR* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19816504 19833346 - Vvi1g1173 Vvi1g1173 770373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1173 704 SMART ha2_5 403 497 IPR007502 GO:0004386
Vvi1g1173 704 Pfam Helicase associated domain (HA2) 404 495 IPR007502 GO:0004386
Vvi1g1173 704 MobiDBLite consensus disorder prediction 654 704 - -
Vvi1g1173 704 CDD DEXHc_RHA-like 20 177 - -
Vvi1g1173 704 Pfam Helicase conserved C-terminal domain 208 339 IPR001650 -
Vvi1g1173 704 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 14 178 IPR014001 -
Vvi1g1173 704 PANTHER OS06G0343100 PROTEIN 3 642 - -
Vvi1g1173 704 Coils Coil 223 243 - -
Vvi1g1173 704 SMART ultradead3 2 187 IPR014001 -
Vvi1g1173 704 Gene3D - 1 180 IPR027417 -
Vvi1g1173 704 Pfam DEAD/DEAH box helicase 11 167 IPR011545 GO:0003676|GO:0005524
Vvi1g1173 704 MobiDBLite consensus disorder prediction 466 488 - -
Vvi1g1173 704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 200 381 IPR001650 -
Vvi1g1173 704 Gene3D - 181 360 IPR027417 -
Vvi1g1173 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 542 IPR027417 -
Vvi1g1173 704 PANTHER ATP-DEPENDENT RNA HELICASE 3 642 - -
Vvi1g1173 704 CDD SF2_C_RHA 182 348 - -
Vvi1g1173 704 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 119 128 IPR002464 -
Vvi1g1173 704 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 563 644 IPR011709 -
Vvi1g1173 704 Gene3D - 389 544 - -
Vvi1g1173 704 SMART helicmild6 227 340 IPR001650 -
Vvi1g1173 704 MobiDBLite consensus disorder prediction 660 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1173 K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] - vvi:100245855 1341.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1173 Blo01g00369 . Bda01g02187 . Bpe13g00524 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007202 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 1 37