Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1174 ATGATGGTATTCAGCAACGCCGGCACCGGATTCCTGGCCGGAAAACAGGTGTTCCCGATCGACTACGCAGCAGAAGTGTCTCAGAAGCTCGTGGATGCTTCACACCGCAACGATCTGAAGTCGGCGTTGGACTGCATCGCCGATCCTTTCGTCGACGTCAGCTTCATCGGAACTGTGTACTTGAGGGCCAGGAAGACGGAGGTTGTTCTCCACGACGAGAGTCCGCACGAAGTTCGCGTGGAGTTCGAGGAGTTCAAGACCGAGGTAACCGCTCTGTTTCTCGCTGCACATGCTGGAAACGTTGCGCTCGTCAGGAAATTGCTGAGTGTTGGAGCTAATGTGAACCAAAAGCTGTTTCGAGGCTATGCGACGACAGCAGCCGTGAGGGAGGGCCATCTGGAGATATTGCAGACACTTATCAATGCAGGGGCGTCTCAGCCGGCATGCGAGGAGGCTTTACTGGAGGCAAGCTATCTTGGGCGGGCCAGACCTGCCGAGTTGCTCATGGGCTCTGAGATGATCCGCCCATATGCTGCTGTGCATGCTCTTGTCACCGCTTGCTGCAGAGGGTTTGTGGATGTTGTGGACACGCTCATCAAGTGTGGAGTTGATGCCAATGCAACTGATAGGATGCTGCTTCAGTCTTCCAAGCCTTTCATGCACACCAATGTTAACTGTAATGCGCTTGCTGTTGCCATTGTTAGTAGACAGGTCTCTGTTGTTCGATTGCTATTACAGGCTGGCGTCAGAGTTGACATCAAAGTTAGACTTGGAGCCTGGTCATGGGACACAGCTACAGGAGAAGAATTTCGGGTAGGAGTGGGATTGGCAGAGCCCTACTCAATCACCTGGTGTGCAGTGGAGTATTTTGAAGCCAGCGGTGCTATCTTGCGCATGCTCTTGCAACACCACTCTGTTAACAACCATCACTTAGGGAGGACCCTTGTGCACCATGCCATCCTATGTGGCAATCCAGGAGCACTTGATGTGCTATTGAATTGTGGTGCAGATGTAGAATTGCCGGTGAAAACAACATCAAAAACAGAGTTACGCCCTATACATTTGGCTGCACAGTTTGGATTGGCTAAAATTCTTCAATGCCTGATCAATGCTGGCTGCAATCTCAACTCTCCAACAGCATCTGGAGAATCTGCACTAATGATCTGCACAAGATACAAACATGACGAGTGTCTTAGAGTTTTGGCCGCAGCTGGTGCTGACTTTGGTTTAGTCAATGCAGCTGGGCAATGCGCCTGCTCGATTGCAAGCTCAATTCGGTGGACTCTTGGCTTTAGACAAGCAGTGTTAGATGTAATTCATGCTGGGAGCACTGTTGCATCAAGCAATACTTCAATATTTTCCCCTCTAATTTTTGCAACTCAAGCAAATGATGCTGTGGCCCTGAAAAAACTCATTGAGCGGCCAGATATCGATATTGACGAACAGGATCAAAATGGATTATCAGCAGCCATGATTGCAGCTGCAGGGGGTCAAGTGGATGCCTTCCGGTTACTTGTTTATGCTGGAGCTAATGTAAAGCTGCAGAACAAATACGGTGAGACAGCACTTACGCTATCAGAGGCTAACCATAATGCCGATCTATTTGAAAAGGTGATCCTTGAATATGCGCTTGAAAGAGGAAACCATCGTTCTGCTGGATTTTACCCTTTACATTGTGCAGCACGCTGTGGAGACTTAGATTTGGCTCGGACATTAGCCAACAGAGGTTATGACATCAACTTTGCTGATACTGATGGATATACTCCACTCATGTTAGCAGCAAGGGGAGGCCATGGCAGCATGTGTGAGTTCTTGATCTCATGCGGGGCAATATGCAACATTAAGAATGAGAGACATGAGACAGCGCTCGTGCTTGCTAGGAAAAATGGATTTGGGAACGGCGCAGAGCGTGTGATACTTGATGAGCTTGCCCGAACACTTGTGCTAGATGGGGCTCCTGTGAAGAAGCACACAAAGAGAGGCAAAGGAACTCCCCACTGTAAACTACTGAAAATGGTGGATGGAATTGGGGTGTTGAGGTGGGGGAAGTCAAGCAAGAGGAATGTGATCTGCAGGGGGGCCGAGCTCGGGCCCAGCACATCATTCCGGTGGAACCGGAGAAGAAAGATTGACGCTGATGAGCCAGGACTGTTCCATGTAATGACCACAAAGAACAAGGAGGTGCATTTTGTATGTGAAGGTGGAATTGAAGTTGCTGAATTGTGGGTGAGGGGCATCAAGCTTGTGACAAGGGAAGCCATTTTCGGAAAGAAACAGAACGATATGTGA 2289 49.28 MMVFSNAGTGFLAGKQVFPIDYAAEVSQKLVDASHRNDLKSALDCIADPFVDVSFIGTVYLRARKTEVVLHDESPHEVRVEFEEFKTEVTALFLAAHAGNVALVRKLLSVGANVNQKLFRGYATTAAVREGHLEILQTLINAGASQPACEEALLEASYLGRARPAELLMGSEMIRPYAAVHALVTACCRGFVDVVDTLIKCGVDANATDRMLLQSSKPFMHTNVNCNALAVAIVSRQVSVVRLLLQAGVRVDIKVRLGAWSWDTATGEEFRVGVGLAEPYSITWCAVEYFEASGAILRMLLQHHSVNNHHLGRTLVHHAILCGNPGALDVLLNCGADVELPVKTTSKTELRPIHLAAQFGLAKILQCLINAGCNLNSPTASGESALMICTRYKHDECLRVLAAAGADFGLVNAAGQCACSIASSIRWTLGFRQAVLDVIHAGSTVASSNTSIFSPLIFATQANDAVALKKLIERPDIDIDEQDQNGLSAAMIAAAGGQVDAFRLLVYAGANVKLQNKYGETALTLSEANHNADLFEKVILEYALERGNHRSAGFYPLHCAARCGDLDLARTLANRGYDINFADTDGYTPLMLAARGGHGSMCEFLISCGAICNIKNERHETALVLARKNGFGNGAERVILDELARTLVLDGAPVKKHTKRGKGTPHCKLLKMVDGIGVLRWGKSSKRNVICRGAELGPSTSFRWNRRRKIDADEPGLFHVMTTKNKEVHFVCEGGIEVAELWVRGIKLVTREAIFGKKQNDM* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19834918 19840992 - Vvi1g1174 Vvi1g1174 770374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat profile. 87 119 IPR002110 GO:0005515
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat profile. 485 517 IPR002110 GO:0005515
Vvi1g1174 762 SUPERFAMILY Ankyrin repeat 309 662 IPR036770 -
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat region circular profile. 485 517 - -
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat profile. 348 380 IPR002110 GO:0005515
Vvi1g1174 762 Pfam Ankyrin repeats (3 copies) 541 616 IPR002110 GO:0005515
Vvi1g1174 762 Gene3D - 345 433 IPR036770 -
Vvi1g1174 762 PANTHER ANKYRIN DOMAIN PROTEIN 11 757 - -
Vvi1g1174 762 PANTHER ANKYRIN REPEAT-CONTAINING 11 757 - -
Vvi1g1174 762 SMART ANK_2a 585 614 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 485 514 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 119 148 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 224 253 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 87 116 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 552 581 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 178 207 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 311 340 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 381 410 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 451 481 IPR002110 GO:0005515
Vvi1g1174 762 SMART ANK_2a 348 377 IPR002110 GO:0005515
Vvi1g1174 762 Gene3D - 73 270 IPR036770 -
Vvi1g1174 762 SUPERFAMILY Ankyrin repeat 89 423 IPR036770 -
Vvi1g1174 762 Gene3D - 538 638 IPR036770 -
Vvi1g1174 762 Gene3D - 434 537 IPR036770 -
Vvi1g1174 762 Gene3D - 280 344 IPR036770 -
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat region circular profile. 87 115 - -
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat region circular profile. 552 583 - -
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat region circular profile. 585 617 - -
Vvi1g1174 762 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1174 - - - vvi:100249369 1511.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009659 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33