Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1175 ATGGTGCAGCCAGTTATTTTTCTTAAAATTCAGCCATTTGCAAAGGATAGCACCAGTTCATCGTCAGTGGTCAGCTTATCAAAAGAGGCATCATTGGATCAGGACGGAGGTGAATCCGTTTCAGAATTGATGAGCGAAGAAAATAATGAGGAAGTCGAGATCGCCTCTTTTACTGATGATGATGATGGTGGTGCTTCCTCACATTCATCACGCATCATTTCCTCTTCTGCATTTGAGACCACTGGATGTTCACCGGCCCAAACTGAAGAGAATGGATCAGGATCAGCAAAGGATAGCTTAAGAAGGAACAATGAAGAGCCTGCCCCATCTTTGGGACCTGCACCTGTAAAACCAGAGGCAAATTTTGTTCCTGAAGCATCCAAACACCTGAATGGGAGTTCATCCCTTTTATCAACAGGCTTGATGATGAGAAATCACGAAGAGAATGAATTAGTTAGTAAATTTACCCAAGATGTTACCAGGAAGCAAGTTGCATTAAGGAGTAATACTCTTGCATTCAACAAGCGAGTGCCTGAGATGCAGGGAAGTTTGGCAACCAATCATAAACTAAAGCATGTGAAGTCTGTACAGTTATCTTATGAGAGAGCTAAACCTGAAGATTCTCATAAAGATGCTAAAGGTTTTGCAGCAAGTGAAAGAAAGGAAAGAATAAATAACTTTTCTGACAGCAAAGTTGAAGTGGAGTCTAGAATTAAGATGCTTGAGGAAGAGTTGAGGGAGGCTGCTGCCATTGAGGTTGGCCTTTACTCGGTTGTTGCTGAGCATGGAAGTTCTACAAATAAGGTCCATGCTCCAGCTCGGCGTCTTTCTAGATTTTATCTTCATGCTTGCAAAGCGAGGACCCAAGCTAAGAGGGCAAGTGCTGCCAGAGCTGCTGCTTCAGGATTAGTTCTGGTTTCTAAAGCATGTGGAAATGATGTTCCAAGGTTAACTTTCTGGTTGTCGAATTCAATTGTATTGAGAGCAACTGTCAGCCAGGCCGTTGTGGAAATGCCACTTTCTGCTGGACCTTCCACCAGAAGTGGTGGAGGTAGAAACAGGTACAATAAAGAAGAAAATAATGCAAGAGAGAGTTCTGATGACTGGGAGGACCCACAAACATTTATTCTTGTGTTGGAAAAGATTGAAGGTTGGATCTTCTCCCGAATCATTGAGTCTGTGTGGTGGCAGACCCTTACTCCATACATGCAGTCCACAGCTGCAAAGATTAGTGATGGAAGTAGGGGTTCAAACTCAAGGAAAACATATGGAAGGAGACATTCTTTGGGTGATCAAGAGCAGGGGAATTTTTCTATTGAACTATGGAAGAGGGCATTCAAAGATGCCTGTGAAAGGCTTTGTCCTACACGAGCTGGAGGGCATGAGTGTGGCTGCTTGCCTGTGCTATCTAGATTGGTCATGGAACAGTTGGTCAGTAGATTAGACGTGGGAATGTTCAATGCTATTCTTCGTGAATCAGCTGAAGAGATGCCAACAGATCCTGTGTCTGATCCCATCTGTGATTCTAAAGTTCTCCCTATTCCAGCTGGAAAATCAAGCTTTGGTGCTGGTGCTCAATTGAAAAATGCTGTAGGGAACTGGTCGAGATGGCTTACAGATCTATTTGGTATTGATGACAATGACGCACCTGGAGATACAAATGAATTTAGTGATGACAAGAGGCTGAAATGTGAGACCTCCTTCAAGGTCTTCCATCTCCTTAATGCATTGAGTGATCTCATGATGCTTCCATTTGAAATGCTAGCTGATAGGTCCACAAGAAAAGAGGTATGCCCAACTTTTGGCGTACCGATCATCAGGAGGGTCCTTGACAATTTTGTCCCAGATGAGTTCTGTCCCGACCCAATTCCAGAGGTCATCTTTGAAACCCTGGATTCTGAGGACTCTCTTGAGGGTGCAGAAGAGTCTATCACAAGCTTCCCATGCATTGCGACTCCCCCAGTCTATTCTCCCCCTTCAGCTGCTTCATTTGCAAGCATCATAGGGGAGGTGGGAAGCCAAAGTCTGCAGAGGAGTGGGTCATCACTGCTTAGAAAGTCATACATTAGCGATGATGAGCTTGATGAACTGGATTCCCCCATAACTTCAATAATCGGTGACAACAGCCGAGGTACTCCTACTTCAACAAAACCCAGTTGGCTGCCTAAGGGAAAGGGGGGTAGGGATGTTGTGAGATATCGACTCCTCCGGGAAGTATGGAGGGATGGTGAATAG 2235 44.56 MVQPVIFLKIQPFAKDSTSSSSVVSLSKEASLDQDGGESVSELMSEENNEEVEIASFTDDDDGGASSHSSRIISSSAFETTGCSPAQTEENGSGSAKDSLRRNNEEPAPSLGPAPVKPEANFVPEASKHLNGSSSLLSTGLMMRNHEENELVSKFTQDVTRKQVALRSNTLAFNKRVPEMQGSLATNHKLKHVKSVQLSYERAKPEDSHKDAKGFAASERKERINNFSDSKVEVESRIKMLEEELREAAAIEVGLYSVVAEHGSSTNKVHAPARRLSRFYLHACKARTQAKRASAARAAASGLVLVSKACGNDVPRLTFWLSNSIVLRATVSQAVVEMPLSAGPSTRSGGGRNRYNKEENNARESSDDWEDPQTFILVLEKIEGWIFSRIIESVWWQTLTPYMQSTAAKISDGSRGSNSRKTYGRRHSLGDQEQGNFSIELWKRAFKDACERLCPTRAGGHECGCLPVLSRLVMEQLVSRLDVGMFNAILRESAEEMPTDPVSDPICDSKVLPIPAGKSSFGAGAQLKNAVGNWSRWLTDLFGIDDNDAPGDTNEFSDDKRLKCETSFKVFHLLNALSDLMMLPFEMLADRSTRKEVCPTFGVPIIRRVLDNFVPDEFCPDPIPEVIFETLDSEDSLEGAEESITSFPCIATPPVYSPPSAASFASIIGEVGSQSLQRSGSSLLRKSYISDDELDELDSPITSIIGDNSRGTPTSTKPSWLPKGKGGRDVVRYRLLREVWRDGE* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19850529 19856793 + Vvi1g1175 Vvi1g1175 770375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1175 744 MobiDBLite consensus disorder prediction 15 34 - -
Vvi1g1175 744 MobiDBLite consensus disorder prediction 700 724 - -
Vvi1g1175 744 MobiDBLite consensus disorder prediction 409 429 - -
Vvi1g1175 744 MobiDBLite consensus disorder prediction 15 131 - -
Vvi1g1175 744 MobiDBLite consensus disorder prediction 702 719 - -
Vvi1g1175 744 MobiDBLite consensus disorder prediction 340 367 - -
Vvi1g1175 744 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 2 744 - -
Vvi1g1175 744 Coils Coil 224 251 - -
Vvi1g1175 744 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 2 744 IPR021827 GO:0005643
Vvi1g1175 744 MobiDBLite consensus disorder prediction 352 367 - -
Vvi1g1175 744 MobiDBLite consensus disorder prediction 44 58 - -
Vvi1g1175 744 MobiDBLite consensus disorder prediction 67 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1175 - - - vvi:100254476 1129.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1175 Blo01g00367 . Bda01g02185 . Bpe13g00526 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0738 . . . . . . . . . . . Bma01g00019 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016656 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7