Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g118 ATGAGGGGGATTCAGGTGAGAGTCACGGGGATGACCTGCGCTGCTTGCTCCAATTCCGTGGAGGGAGCTCTCCGGGACGTCAATGGTGTCCTGAGGGCCTCCGTGGCGCTGCTTCAGAACAGGGCTGACGTGGTTTTTGACCCCAAATTGGTTGGGGAAGAGGATATAAAAAATGCTATTGAAGATGCTGGGTTTGATGCAGAGATTATGAGTGAACCCAGTCGAACGAAGCCACATGGGACCCTGCTGGGGCAGTTCACGATAGGAGGTATGACATGTGCTGTGTGTGTGAACTCCGTTGAAGGAATCTTGAGAAAGCTTCCTGGTGTCAAGAGGGCTGTAGTTGCCTTGGCAACTTCATTAGGTGAAGTTGAGTATGATCCTACAATTATTAGTAAAGATGATATAGTCAATGCCATTGAAGATGCTGGTTTTGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATCATACTAGGGGTTACTGGGATATCTAATGAGATGGATGCACTGATTTTAGAAGGCATACTCACCAGCATAAGAGGTGTGAGACAATTTCTATTCGACCGGACGTTAGGAGAACTTGAAGTTCTCTTTGATCCTGAAGTTATCAGTTCTAGATCCTTAGTTGATGGAATTGAGGGTGGAAGCAATGCTAAGTTTAAATTACATGTCAAGAACCCTTATACGAGAATGACTTCTAAAGATCTAGAAGAATCCTCAAACATGTTTCGGCTCTTCACCTCTAGTTTGTTTCTCAGTATTCCTGTCTTTCTCATACGAGTTGTTTGCCCTCATATACCTCTGGTGGATTCATTATTGCTCTTGCGATGTGGACCCTTTCTAATGGGTGATTGGTTGAAATGGGCATTAGTCAGTCTTGTTCAATTTGTCATTGGGAAGCGTTTCTATATTGCTGCCGGTAGAGCACTTCGAAATGGTTCAGCGAACATGGATGTTTTGGTTGCATTGGGAACTTCAGCCTCATACTTTTACTCTGTTTGTGCACTTCTGTATGGTGCAGTCACTGGGTTTTGGTCTCCAACTTACTTCGAAGCAAGTGCCATGCTAATAACATTTGTATTATTGGGGAAATATTTGGAAAGTCTTGCTAAGGGGAAGACATCAGATGCGATCAAGAAGTTAGTAGAACTTGCACCAGCAACGGCTCTGTTGCTTGTCAAAGATAAAGGTGGAAGGTTCATTGAAGAACAAGAAATAGATGCTATGCTAATTCAGCCTGGTGACGTATTGAAAGTTCTTCCTGGTACAAAGGTTCCTGCTGATGGTATTGTCATGTGGGGTTCAAGTTATGTCAATGAGAGTATGGTAACAGGTGAATCTGCACCTGTTTCGAAGGAAGTCAATTCACCAGTTATTGGAGGTACAATGAATTTATATGGTGCCCTTCACATACAAGCCACCAAAGTAGGATCTAACGCAGTTTTGAGCCAGATAATTAGTTTGGTTGAGACAGCTCAGATGTCCAAAGCTCCTATTCAGAAGTTTGCTGACTTTGTTGCCAGTATTTTTGTTCCAACAGTTGTTGCTATGTCGTTGCTGACACTATTGGGCTGGTATGTTTCTGGCACTCTTGGTGCTTACCCAAAGCAATGGCTGCCAGAAAATGGAAATTATTTTGTTTTTGCACTTATGTTTGCAATATCAGTTGTGGTGATTGCATGCCCCTGTGCCTTGGGCCTGGCAACACCAACTGCTGTCATGGTTGCAACAGGGGTTGGGGCTAATAATGGTGTGCTGATAAAAGGAGGAGATGCTTTGGAAAGGGCTCAGAAGGTTAAGTATGTGGTATTTGATAAAACAGGCACCCTAACTCAGGGAAAAGCTACAGTTACAACTGCAAAAGTTTTCACAGGAATGGATCATGGAGAATTTCTTACTTTGGTAGCTTCTGCAGAGGCTAGTAGTGAACACCCACTGGCTGTAGCCATAGTGGAATATGCTCGCCATTTCCATTTCTTTGAGGAGCCTTCTACAACCAAGGATGCTCAAGACCACAGCAGAGAGACTAGATTCTCTGGATGGCTTCTGGATGTCTCAGAGTTTTCTGCTTTGCCTGGAAGAGGTGTCCAGTGCTTTATAAAAGGAAAACGAGTCCTGGTTGGTAATCGAAAGTTGCTGACTGAAAGTGGGGTCACAATCCCAACTGATGTAGAAAATTTTCTTGTAAATTTGGAAGAAAGTGCAAAAACAGGTGTACTTGTTGCATATGATGATACCGCAGTTGGTGTTTTGGGGGTTGCAGATCCACTAAAGCGAGAAGCTGCTGTGGTTGTGGAAGGCCTTTTAAAAATGGGTGTCATACCAGTCATGGTTACGGGGGACAATTGGAGGACCGCTCGGGCTGTTGCTAAGGAGGTTGGCATTCAAGATGTAAGGGCAGAGGTAATGCCAGCAGGAAAAGCTGAAGTCATCCATTCCTTTCAGAAAGATGGAAGCATAGTTGCAATGGTGGGCGATGGTATTAACGACTCTCCTGCCCTGGCTGCTGCAGATGTTGGTATGGCAATAGGAGCAGGGACTGATATCGCCATAGAAGCTGCAGACTATGTGCTGATGAGGAGTAACTTAGAAGATGTAATCACAGCCATTGACCTCTCGAGGAAGACCTTCTCCCGCATCCGGTTGAACTATGTCTTTGCCATGGCCTACAATGTGATCGCGATTCCCATTGCTGCTGGGGTCTTCTTCCCTTGGCTAGGTATAAAGTTGCCACCATGGGCTGCTGGCGCATGCATGGCTCTCTCATCTGTAAGTGTTGTGTGCTCTTCTTTGCTTCTAAGGAGATACAAAAAACCAAGGCTTACAACTATACTAGAAATAACTGTAGAGTAG 2859 44.56 MRGIQVRVTGMTCAACSNSVEGALRDVNGVLRASVALLQNRADVVFDPKLVGEEDIKNAIEDAGFDAEIMSEPSRTKPHGTLLGQFTIGGMTCAVCVNSVEGILRKLPGVKRAVVALATSLGEVEYDPTIISKDDIVNAIEDAGFEASFVQSSEQDKIILGVTGISNEMDALILEGILTSIRGVRQFLFDRTLGELEVLFDPEVISSRSLVDGIEGGSNAKFKLHVKNPYTRMTSKDLEESSNMFRLFTSSLFLSIPVFLIRVVCPHIPLVDSLLLLRCGPFLMGDWLKWALVSLVQFVIGKRFYIAAGRALRNGSANMDVLVALGTSASYFYSVCALLYGAVTGFWSPTYFEASAMLITFVLLGKYLESLAKGKTSDAIKKLVELAPATALLLVKDKGGRFIEEQEIDAMLIQPGDVLKVLPGTKVPADGIVMWGSSYVNESMVTGESAPVSKEVNSPVIGGTMNLYGALHIQATKVGSNAVLSQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMSLLTLLGWYVSGTLGAYPKQWLPENGNYFVFALMFAISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKVKYVVFDKTGTLTQGKATVTTAKVFTGMDHGEFLTLVASAEASSEHPLAVAIVEYARHFHFFEEPSTTKDAQDHSRETRFSGWLLDVSEFSALPGRGVQCFIKGKRVLVGNRKLLTESGVTIPTDVENFLVNLEESAKTGVLVAYDDTAVGVLGVADPLKREAAVVVEGLLKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKAEVIHSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRSNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVIAIPIAAGVFFPWLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTILEITVE* 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1169465 1177451 - Vvi1g118 Vvi1g118 769318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g118 952 Pfam E1-E2 ATPase 387 584 - -
Vvi1g118 952 Gene3D - 373 495 - -
Vvi1g118 952 SUPERFAMILY HMA, heavy metal-associated domain 153 216 IPR036163 GO:0046872
Vvi1g118 952 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 685 905 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi1g118 952 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 358 657 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi1g118 952 CDD P-type_ATPase_Cu-like 246 922 - -
Vvi1g118 952 ProSitePatterns Heavy-metal-associated domain. 8 38 IPR017969 GO:0046872
Vvi1g118 952 PRINTS H+-transporting ATPase (proton pump) signature 798 814 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi1g118 952 PRINTS H+-transporting ATPase (proton pump) signature 826 842 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi1g118 952 PRINTS H+-transporting ATPase (proton pump) signature 857 882 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi1g118 952 SUPERFAMILY Calcium ATPase, transmembrane domain M 345 915 IPR023298 -
Vvi1g118 952 SUPERFAMILY HAD-like 604 932 IPR036412 -
Vvi1g118 952 Gene3D - 1 72 - -
Vvi1g118 952 ProSitePatterns E1-E2 ATPases phosphorylation site. 607 613 IPR018303 -
Vvi1g118 952 Gene3D - 572 883 IPR023214 -
Vvi1g118 952 SFLD p-type atpase 587 878 IPR044492 -
Vvi1g118 952 TIGRFAM TIGR00003: copper ion binding protein 85 147 IPR006122 GO:0005507
Vvi1g118 952 TIGRFAM TIGR00003: copper ion binding protein 5 67 IPR006122 GO:0005507
Vvi1g118 952 ProSiteProfiles Heavy-metal-associated domain profile. 83 149 IPR006121 GO:0046872
Vvi1g118 952 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 319 935 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vvi1g118 952 PANTHER HEAVY METAL P-TYPE ATPASE 3 945 - -
Vvi1g118 952 CDD HMA 85 148 IPR006121 GO:0046872
Vvi1g118 952 CDD HMA 5 68 IPR006121 GO:0046872
Vvi1g118 952 SFLD Haloacid Dehalogenase 587 878 - -
Vvi1g118 952 Pfam Heavy-metal-associated domain 86 146 IPR006121 GO:0046872
Vvi1g118 952 Pfam Heavy-metal-associated domain 6 66 IPR006121 GO:0046872
Vvi1g118 952 SUPERFAMILY Calcium ATPase, transduction domain A 405 491 IPR008250 -
Vvi1g118 952 Gene3D - 706 757 IPR023299 GO:0000166
Vvi1g118 952 Gene3D - 612 705 IPR023299 GO:0000166
Vvi1g118 952 Pfam haloacid dehalogenase-like hydrolase 601 840 - -
Vvi1g118 952 ProSiteProfiles Heavy-metal-associated domain profile. 3 69 IPR006121 GO:0046872
Vvi1g118 952 PANTHER ATP7, ISOFORM B 3 945 - -
Vvi1g118 952 SUPERFAMILY HMA, heavy metal-associated domain 83 153 IPR036163 GO:0046872
Vvi1g118 952 Gene3D - 84 149 - -
Vvi1g118 952 ProSiteProfiles Heavy-metal-associated domain profile. 157 215 IPR006121 GO:0046872
Vvi1g118 952 SUPERFAMILY HMA, heavy metal-associated domain 4 73 IPR036163 GO:0046872
Vvi1g118 952 PRINTS P-type cation-transporting ATPase superfamily signature 441 455 - -
Vvi1g118 952 PRINTS P-type cation-transporting ATPase superfamily signature 605 619 - -
Vvi1g118 952 PRINTS P-type cation-transporting ATPase superfamily signature 751 762 - -
Vvi1g118 952 PRINTS P-type cation-transporting ATPase superfamily signature 773 783 - -
Vvi1g118 952 PRINTS P-type cation-transporting ATPase superfamily signature 826 845 - -
Vvi1g118 952 PRINTS P-type cation-transporting ATPase superfamily signature 849 861 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g118 K17686 - vvi:100266338 1838.93