Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g118 | ATGAGGGGGATTCAGGTGAGAGTCACGGGGATGACCTGCGCTGCTTGCTCCAATTCCGTGGAGGGAGCTCTCCGGGACGTCAATGGTGTCCTGAGGGCCTCCGTGGCGCTGCTTCAGAACAGGGCTGACGTGGTTTTTGACCCCAAATTGGTTGGGGAAGAGGATATAAAAAATGCTATTGAAGATGCTGGGTTTGATGCAGAGATTATGAGTGAACCCAGTCGAACGAAGCCACATGGGACCCTGCTGGGGCAGTTCACGATAGGAGGTATGACATGTGCTGTGTGTGTGAACTCCGTTGAAGGAATCTTGAGAAAGCTTCCTGGTGTCAAGAGGGCTGTAGTTGCCTTGGCAACTTCATTAGGTGAAGTTGAGTATGATCCTACAATTATTAGTAAAGATGATATAGTCAATGCCATTGAAGATGCTGGTTTTGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATCATACTAGGGGTTACTGGGATATCTAATGAGATGGATGCACTGATTTTAGAAGGCATACTCACCAGCATAAGAGGTGTGAGACAATTTCTATTCGACCGGACGTTAGGAGAACTTGAAGTTCTCTTTGATCCTGAAGTTATCAGTTCTAGATCCTTAGTTGATGGAATTGAGGGTGGAAGCAATGCTAAGTTTAAATTACATGTCAAGAACCCTTATACGAGAATGACTTCTAAAGATCTAGAAGAATCCTCAAACATGTTTCGGCTCTTCACCTCTAGTTTGTTTCTCAGTATTCCTGTCTTTCTCATACGAGTTGTTTGCCCTCATATACCTCTGGTGGATTCATTATTGCTCTTGCGATGTGGACCCTTTCTAATGGGTGATTGGTTGAAATGGGCATTAGTCAGTCTTGTTCAATTTGTCATTGGGAAGCGTTTCTATATTGCTGCCGGTAGAGCACTTCGAAATGGTTCAGCGAACATGGATGTTTTGGTTGCATTGGGAACTTCAGCCTCATACTTTTACTCTGTTTGTGCACTTCTGTATGGTGCAGTCACTGGGTTTTGGTCTCCAACTTACTTCGAAGCAAGTGCCATGCTAATAACATTTGTATTATTGGGGAAATATTTGGAAAGTCTTGCTAAGGGGAAGACATCAGATGCGATCAAGAAGTTAGTAGAACTTGCACCAGCAACGGCTCTGTTGCTTGTCAAAGATAAAGGTGGAAGGTTCATTGAAGAACAAGAAATAGATGCTATGCTAATTCAGCCTGGTGACGTATTGAAAGTTCTTCCTGGTACAAAGGTTCCTGCTGATGGTATTGTCATGTGGGGTTCAAGTTATGTCAATGAGAGTATGGTAACAGGTGAATCTGCACCTGTTTCGAAGGAAGTCAATTCACCAGTTATTGGAGGTACAATGAATTTATATGGTGCCCTTCACATACAAGCCACCAAAGTAGGATCTAACGCAGTTTTGAGCCAGATAATTAGTTTGGTTGAGACAGCTCAGATGTCCAAAGCTCCTATTCAGAAGTTTGCTGACTTTGTTGCCAGTATTTTTGTTCCAACAGTTGTTGCTATGTCGTTGCTGACACTATTGGGCTGGTATGTTTCTGGCACTCTTGGTGCTTACCCAAAGCAATGGCTGCCAGAAAATGGAAATTATTTTGTTTTTGCACTTATGTTTGCAATATCAGTTGTGGTGATTGCATGCCCCTGTGCCTTGGGCCTGGCAACACCAACTGCTGTCATGGTTGCAACAGGGGTTGGGGCTAATAATGGTGTGCTGATAAAAGGAGGAGATGCTTTGGAAAGGGCTCAGAAGGTTAAGTATGTGGTATTTGATAAAACAGGCACCCTAACTCAGGGAAAAGCTACAGTTACAACTGCAAAAGTTTTCACAGGAATGGATCATGGAGAATTTCTTACTTTGGTAGCTTCTGCAGAGGCTAGTAGTGAACACCCACTGGCTGTAGCCATAGTGGAATATGCTCGCCATTTCCATTTCTTTGAGGAGCCTTCTACAACCAAGGATGCTCAAGACCACAGCAGAGAGACTAGATTCTCTGGATGGCTTCTGGATGTCTCAGAGTTTTCTGCTTTGCCTGGAAGAGGTGTCCAGTGCTTTATAAAAGGAAAACGAGTCCTGGTTGGTAATCGAAAGTTGCTGACTGAAAGTGGGGTCACAATCCCAACTGATGTAGAAAATTTTCTTGTAAATTTGGAAGAAAGTGCAAAAACAGGTGTACTTGTTGCATATGATGATACCGCAGTTGGTGTTTTGGGGGTTGCAGATCCACTAAAGCGAGAAGCTGCTGTGGTTGTGGAAGGCCTTTTAAAAATGGGTGTCATACCAGTCATGGTTACGGGGGACAATTGGAGGACCGCTCGGGCTGTTGCTAAGGAGGTTGGCATTCAAGATGTAAGGGCAGAGGTAATGCCAGCAGGAAAAGCTGAAGTCATCCATTCCTTTCAGAAAGATGGAAGCATAGTTGCAATGGTGGGCGATGGTATTAACGACTCTCCTGCCCTGGCTGCTGCAGATGTTGGTATGGCAATAGGAGCAGGGACTGATATCGCCATAGAAGCTGCAGACTATGTGCTGATGAGGAGTAACTTAGAAGATGTAATCACAGCCATTGACCTCTCGAGGAAGACCTTCTCCCGCATCCGGTTGAACTATGTCTTTGCCATGGCCTACAATGTGATCGCGATTCCCATTGCTGCTGGGGTCTTCTTCCCTTGGCTAGGTATAAAGTTGCCACCATGGGCTGCTGGCGCATGCATGGCTCTCTCATCTGTAAGTGTTGTGTGCTCTTCTTTGCTTCTAAGGAGATACAAAAAACCAAGGCTTACAACTATACTAGAAATAACTGTAGAGTAG | 2859 | 44.56 | MRGIQVRVTGMTCAACSNSVEGALRDVNGVLRASVALLQNRADVVFDPKLVGEEDIKNAIEDAGFDAEIMSEPSRTKPHGTLLGQFTIGGMTCAVCVNSVEGILRKLPGVKRAVVALATSLGEVEYDPTIISKDDIVNAIEDAGFEASFVQSSEQDKIILGVTGISNEMDALILEGILTSIRGVRQFLFDRTLGELEVLFDPEVISSRSLVDGIEGGSNAKFKLHVKNPYTRMTSKDLEESSNMFRLFTSSLFLSIPVFLIRVVCPHIPLVDSLLLLRCGPFLMGDWLKWALVSLVQFVIGKRFYIAAGRALRNGSANMDVLVALGTSASYFYSVCALLYGAVTGFWSPTYFEASAMLITFVLLGKYLESLAKGKTSDAIKKLVELAPATALLLVKDKGGRFIEEQEIDAMLIQPGDVLKVLPGTKVPADGIVMWGSSYVNESMVTGESAPVSKEVNSPVIGGTMNLYGALHIQATKVGSNAVLSQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMSLLTLLGWYVSGTLGAYPKQWLPENGNYFVFALMFAISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKVKYVVFDKTGTLTQGKATVTTAKVFTGMDHGEFLTLVASAEASSEHPLAVAIVEYARHFHFFEEPSTTKDAQDHSRETRFSGWLLDVSEFSALPGRGVQCFIKGKRVLVGNRKLLTESGVTIPTDVENFLVNLEESAKTGVLVAYDDTAVGVLGVADPLKREAAVVVEGLLKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKAEVIHSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRSNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVIAIPIAAGVFFPWLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTILEITVE* | 953 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1169465 | 1177451 | - | Vvi1g118 | Vvi1g118 | 769318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g118 | 952 | Pfam | E1-E2 ATPase | 387 | 584 | - | - | |
Vvi1g118 | 952 | Gene3D | - | 373 | 495 | - | - | |
Vvi1g118 | 952 | SUPERFAMILY | HMA, heavy metal-associated domain | 153 | 216 | IPR036163 | GO:0046872 | |
Vvi1g118 | 952 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 685 | 905 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi1g118 | 952 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 358 | 657 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi1g118 | 952 | CDD | P-type_ATPase_Cu-like | 246 | 922 | - | - | |
Vvi1g118 | 952 | ProSitePatterns | Heavy-metal-associated domain. | 8 | 38 | IPR017969 | GO:0046872 | |
Vvi1g118 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 798 | 814 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi1g118 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 826 | 842 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi1g118 | 952 | PRINTS | H+-transporting ATPase (proton pump) signature | 857 | 882 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi1g118 | 952 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 345 | 915 | IPR023298 | - | |
Vvi1g118 | 952 | SUPERFAMILY | HAD-like | 604 | 932 | IPR036412 | - | |
Vvi1g118 | 952 | Gene3D | - | 1 | 72 | - | - | |
Vvi1g118 | 952 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 607 | 613 | IPR018303 | - | |
Vvi1g118 | 952 | Gene3D | - | 572 | 883 | IPR023214 | - | |
Vvi1g118 | 952 | SFLD | p-type atpase | 587 | 878 | IPR044492 | - | |
Vvi1g118 | 952 | TIGRFAM | TIGR00003: copper ion binding protein | 85 | 147 | IPR006122 | GO:0005507 | |
Vvi1g118 | 952 | TIGRFAM | TIGR00003: copper ion binding protein | 5 | 67 | IPR006122 | GO:0005507 | |
Vvi1g118 | 952 | ProSiteProfiles | Heavy-metal-associated domain profile. | 83 | 149 | IPR006121 | GO:0046872 | |
Vvi1g118 | 952 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 319 | 935 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Vvi1g118 | 952 | PANTHER | HEAVY METAL P-TYPE ATPASE | 3 | 945 | - | - | |
Vvi1g118 | 952 | CDD | HMA | 85 | 148 | IPR006121 | GO:0046872 | |
Vvi1g118 | 952 | CDD | HMA | 5 | 68 | IPR006121 | GO:0046872 | |
Vvi1g118 | 952 | SFLD | Haloacid Dehalogenase | 587 | 878 | - | - | |
Vvi1g118 | 952 | Pfam | Heavy-metal-associated domain | 86 | 146 | IPR006121 | GO:0046872 | |
Vvi1g118 | 952 | Pfam | Heavy-metal-associated domain | 6 | 66 | IPR006121 | GO:0046872 | |
Vvi1g118 | 952 | SUPERFAMILY | Calcium ATPase, transduction domain A | 405 | 491 | IPR008250 | - | |
Vvi1g118 | 952 | Gene3D | - | 706 | 757 | IPR023299 | GO:0000166 | |
Vvi1g118 | 952 | Gene3D | - | 612 | 705 | IPR023299 | GO:0000166 | |
Vvi1g118 | 952 | Pfam | haloacid dehalogenase-like hydrolase | 601 | 840 | - | - | |
Vvi1g118 | 952 | ProSiteProfiles | Heavy-metal-associated domain profile. | 3 | 69 | IPR006121 | GO:0046872 | |
Vvi1g118 | 952 | PANTHER | ATP7, ISOFORM B | 3 | 945 | - | - | |
Vvi1g118 | 952 | SUPERFAMILY | HMA, heavy metal-associated domain | 83 | 153 | IPR036163 | GO:0046872 | |
Vvi1g118 | 952 | Gene3D | - | 84 | 149 | - | - | |
Vvi1g118 | 952 | ProSiteProfiles | Heavy-metal-associated domain profile. | 157 | 215 | IPR006121 | GO:0046872 | |
Vvi1g118 | 952 | SUPERFAMILY | HMA, heavy metal-associated domain | 4 | 73 | IPR036163 | GO:0046872 | |
Vvi1g118 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 441 | 455 | - | - | |
Vvi1g118 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 605 | 619 | - | - | |
Vvi1g118 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 751 | 762 | - | - | |
Vvi1g118 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 773 | 783 | - | - | |
Vvi1g118 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 826 | 845 | - | - | |
Vvi1g118 | 952 | PRINTS | P-type cation-transporting ATPase superfamily signature | 849 | 861 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g118 | K17686 | - | vvi:100266338 | 1838.93 |