Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1183 ATGTTTTCTATAGTAAGTATGCCTTCAACATCATCGGTTTTATCAGCATACACCACCTTTGCTGCATCAGCAATGGTGGTTAAAACCATGCTACATGAAGTTCAGACCATGGCCAAACAGCTCATACCTCAACCACTCCAGGACAAGATTTTATCAGGAATTGGAAGGCTTCTTGGGGATCCCTCCTCTCAGATGACTCTTGTCATTGATGAATACAACGGCTACGCCATGAATCAAATCTTTGAGGCTTCTGAAATCTACCTGCAGACCAGGATCAGCCCAGCAGTCAGTAGGCTCAGGGTTTCCCGAGCTCCAAGAGAGAAGGACCTCTTGATCACCATCAACAAGGGTGAAAAGGTCATGGGTGGAGACAAGGGCGAACGTAGATCAATTGAGCTCAGTTTCCTTAAGAAATACATGGAGAAGGTATTGAGCTCTTACTTGCCATATGTGGTGGAGAGATCAGAATCGATAAAAGAAGAAAACAAGGTGGTGAAGCTCTATTCCCTAGGGAACTTCCAAGGAGGAGCCATGGTTGGTGGGGGAGCATGGGGGTCCATCAATCTCGACCACCCCTCAACTTTTGAAACATTGGCCATGGATTTGAAGCTCAAGGAGGACTTGATAAAAGACTTGGACAGATTTGTAAGGAGGAGGAAGTTCTATAAAAGAGTTGGTAAGGCATGGAAAAGAGGGTATTTGTTGTATGGCCCTCCAGGCACAGGCAAGACAAGCTTGATTGCAGCCATGGCCAACTATCTGAAATTTGATGTCTATGATTTAGAGCTCACAAGTCTCCAGAGGAACTCACAGCTTAGAAAGCTCTTAGTCTCCACCAAGAACAGATCAATACTTGTGATTGAGGACATCGATTGCAGCACTGAATTACAAGACAGACAAGCTGGAAGATACAACCAACCTACCACTCAGCTAACACTATCTGGGTTGCTTAATTTCATTGATGGGCTGTGGTCAAGCTGTGGGGATGAGAGGATAATAGTGTTCACAACAAATCACAAAGACAGGATAGATCCTGCATTGCTGAGACCAGGGCGCATGGATATGCACATCCACATGTCCTACTGCACTCCCTATGGATTTAAGACCCTGGCTTCCAACTACCTTGGAGTAAGCAACCACAGACTGTTCACTGAAATCGAAAGGCTGATAACAGAGGTGGAGGTAACCCCAGCAGAGATTGCAGAAGAGCTCATGAAAAGTGAGGAAGCTGATGTGGCCCTTGAAGGACTCATCGCGTTCCTCAAGAGGGCCAAGAGTGCAGAAAATAAATCAAATTGTCGAGGAAAGAAAGTTGATGAACAAGGAATAGAAAGGCAGGATGTTGTTCAAAGTGGGAAGGTAGTTGAAGCAAAGAGGCAGAAGATGAGTGGAGAACTAGAGGCTTGTGATTTTATGCCATGCGCATACTCGTTTCTATGA 1440 45.28 MFSIVSMPSTSSVLSAYTTFAASAMVVKTMLHEVQTMAKQLIPQPLQDKILSGIGRLLGDPSSQMTLVIDEYNGYAMNQIFEASEIYLQTRISPAVSRLRVSRAPREKDLLITINKGEKVMGGDKGERRSIELSFLKKYMEKVLSSYLPYVVERSESIKEENKVVKLYSLGNFQGGAMVGGGAWGSINLDHPSTFETLAMDLKLKEDLIKDLDRFVRRRKFYKRVGKAWKRGYLLYGPPGTGKTSLIAAMANYLKFDVYDLELTSLQRNSQLRKLLVSTKNRSILVIEDIDCSTELQDRQAGRYNQPTTQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKDRIDPALLRPGRMDMHIHMSYCTPYGFKTLASNYLGVSNHRLFTEIERLITEVEVTPAEIAEELMKSEEADVALEGLIAFLKRAKSAENKSNCRGKKVDEQGIERQDVVQSGKVVEAKRQKMSGELEACDFMPCAYSFL* 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19921836 19923437 + Vvi1g1183 Vvi1g1183 770383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1183 479 CDD AAA 230 361 - -
Vvi1g1183 479 SMART AAA_5 229 363 IPR003593 -
Vvi1g1183 479 Gene3D - 186 357 IPR027417 -
Vvi1g1183 479 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Vvi1g1183 479 PANTHER BNAA10G17020D PROTEIN 6 434 - -
Vvi1g1183 479 PANTHER BCS1 AAA-TYPE ATPASE 6 434 - -
Vvi1g1183 479 Gene3D - 358 430 - -
Vvi1g1183 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 406 IPR027417 -
Vvi1g1183 479 Pfam Domain associated at C-terminal with AAA 42 120 IPR025753 -
Vvi1g1183 479 Pfam ATPase family associated with various cellular activities (AAA) 234 360 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1183 - - K08900 vvi:100257876 894.034
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1183 . . . . . . . . . . . . . . . . . Bhi07g01899 Tan04g0078 Cmetu10g0910 Lac13g0068 Hepe10g1530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111