Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1184 ATGGATATTCATGAGGTTGAAGAGAGTTTGTTCGCGGTCAGTGATGCCAAGTTACATGGAGGGATGTGCAGGATGCTCTCCACGATTTATTGCAAAATACTGGAAATTTTCCCTGTTCTGGAAGCAGCAAGGCCTAGGAGCAAATCAGGTATTCAGGCATTATGCTCATTGCACATAGCGCTGGAGAAGGCCAAGAATATTCTTCAGCATTGCTCAGAATGTAGTAAACTTTATTTGGCTATTACTGGTGATTCAGTGGCTTTAAAATTCGAGAAGGCACGATGTGCTCTTGCAGATAGTCTGAGGCGAGTTGAAGATATTGTTCCACAAACTATTGGTGTCCAGATTTCTGAGATAGTAAGTGAACTTGAGGGAACTGCATTCGCACTTGATCCATTGGAGAAGCAAGTTGGTGATGATATAATTGCATTGCTCCAGCAGGGCAGAAAATTCAACAACAGCAATGACAATAATGAGCTCGAGTCTTTTCACCAAGCTGCTTCTAGACTTGGTATCACCTCTTCAAGAGCAGCCCTTACAGAGAGAAGAGCTCTTAAGAAGCTCATAGAAAGAGCTCGTATTGAGGAAGACAAGCGGAAAGAATCAATTGTTGCTTATCTTTTACATCTCATGAGAAAATACTCTAAGTTATTTAGAAGTGAGTTATCAGATGACAATGATTCACAGGGTTCGGCTCCTTGTTCGCCGACTGTTATGGGTTCTCTTGAAGATGGTGTTGGACCTGCAGTCTATGGTCATGCCTTTGAGAGACAGCTCTCAAAACTTGGTTCTTTCAATTTCAAGCCAAATAATAGGAGATCTGGGCAGATGCCTCTTCCACAAGAAGAGTTGAGGTGTCCAATATCATTGCAGCTCATGTATGATCCAGTGATAATATCTTCTGGGCAAACGTATGAAAGAATCTGCATTGAGAAATGGTTCAGTGATGGGCACAACACTTGCCCGAAAACTCAACAGCAGCTATCTCATCTTTGTCTAACTCCTAATTACTGTGTTAAGGGTCTCATTGCGAGCTGGTGTGAACAGAATGGAGTTCCTGTTCCTGATGGCCCTCCAGAGTCTCTTGATCTCAACTACTGGAGGCTCGCTTTGTCTGAGTGTGAGTCAACAAATTCGAAATCAATGGACAGCATTGGTTCCTGCAAGATGAAGGGGGTAAAGGTGGTTCCTTTAGAGGAGAGTGGCATAATTGAGGAGGTCGAGGGAAATGAAATGGAAAATGTGCATGAACAGGATGAAGAGTCTGAAAACGTGTTTGAAAGATATGAGAACTTTCTGGCTATCTTGGATGGAGAGGAAGACTTGAGGAAAAAGTGCAAGGTGGCAGAACAGATCAGACACTTGCTAAAGGACGATGAGGAAGCCAGGAATTTTATGGGAGCTAATGGGTTTGTTGAAGCATTGATGCGCTTTTTAGAGTTGGCTGTGCGAGGAAGGAATGAAATGGCTCAGGAAATTGGGGCTATGGCTCTGTTCAATCTTGCTGTTAACAATAACAGAAACAAGGAACTGATGTTGGCATCGGGAGTACTCCCATTGCTTGAGGAAATGATCCCCAATTCCAACTCCCATGGATCAGCTACAGCCCTCTACCTGAACCTTTCTTGTCTTGAAGAAGCCAAGCCCATGATTAGCACAAGCCAAGCTGTCCCCTTTTTAATCCATCTGCTTGGAGCTAAAACTGAACCGCAATGCAAGCTTGATGCCCTCCATGCCCTCTATAATCTCTCCACCCATCCTGCCAATATCCCCAACCTACTTGCAGCTGGCATTATCAGCGGCCTCCATTCCCTTCTCACAGACCCGGCTGACAACACATGGACAGAAAAAACCTTGGCTGTCTTTGTAAACTTGGCTTCAAATAAATTAGGAAAAGATGAAATCATGAAATGCAGTCAGATGGTCCTCCAAGAAGGGGTGATACCTGCATTGGTTTCCATATCAGTGAATGGGACCGTGAGAGGGAAAGAAAAGGCTCAGAAACTTCTGATGCTGTTTCGGGAGCAGCGGCAGCGAGACCCATCACCTGTTGGGAGTCCTCATCATACTGAAAGCAGTACCGAGGCTGTGCCTGCCATTGGAATCCAAGCCATATTGTAA 2121 44.51 MDIHEVEESLFAVSDAKLHGGMCRMLSTIYCKILEIFPVLEAARPRSKSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDSVALKFEKARCALADSLRRVEDIVPQTIGVQISEIVSELEGTAFALDPLEKQVGDDIIALLQQGRKFNNSNDNNELESFHQAASRLGITSSRAALTERRALKKLIERARIEEDKRKESIVAYLLHLMRKYSKLFRSELSDDNDSQGSAPCSPTVMGSLEDGVGPAVYGHAFERQLSKLGSFNFKPNNRRSGQMPLPQEELRCPISLQLMYDPVIISSGQTYERICIEKWFSDGHNTCPKTQQQLSHLCLTPNYCVKGLIASWCEQNGVPVPDGPPESLDLNYWRLALSECESTNSKSMDSIGSCKMKGVKVVPLEESGIIEEVEGNEMENVHEQDEESENVFERYENFLAILDGEEDLRKKCKVAEQIRHLLKDDEEARNFMGANGFVEALMRFLELAVRGRNEMAQEIGAMALFNLAVNNNRNKELMLASGVLPLLEEMIPNSNSHGSATALYLNLSCLEEAKPMISTSQAVPFLIHLLGAKTEPQCKLDALHALYNLSTHPANIPNLLAAGIISGLHSLLTDPADNTWTEKTLAVFVNLASNKLGKDEIMKCSQMVLQEGVIPALVSISVNGTVRGKEKAQKLLMLFREQRQRDPSPVGSPHHTESSTEAVPAIGIQAIL* 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19925331 19930565 - Vvi1g1184 Vvi1g1184 770384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1184 706 CDD RING-Ubox_PUB 284 326 IPR045210 -
Vvi1g1184 706 Gene3D - 433 680 IPR011989 -
Vvi1g1184 706 PANTHER U BOX DOMAIN-CONTAINING 1 636 - -
Vvi1g1184 706 PANTHER U BOX DOMAIN-CONTAINING 637 686 - -
Vvi1g1184 706 SUPERFAMILY ARM repeat 420 660 IPR016024 -
Vvi1g1184 706 Pfam U-box domain 282 350 IPR003613 GO:0004842|GO:0016567
Vvi1g1184 706 SUPERFAMILY RING/U-box 280 356 - -
Vvi1g1184 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Vvi1g1184 706 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Vvi1g1184 706 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 636 - -
Vvi1g1184 706 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 637 686 - -
Vvi1g1184 706 SMART arm_5 544 585 IPR000225 GO:0005515
Vvi1g1184 706 SMART arm_5 586 627 IPR000225 GO:0005515
Vvi1g1184 706 SMART arm_5 505 543 IPR000225 GO:0005515
Vvi1g1184 706 SMART arm_5 459 503 IPR000225 GO:0005515
Vvi1g1184 706 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1184 - - - vvi:100256374 1366.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1184 Blo01g00365 Blo16g01194 . . . Bpe10g00785 . Bma15g00238 Cmo04g01920 Cmo18g00698 . Cma18g00710 . Car18g00655 Sed06g1738 Cpe09g00579 Cpe01g01608 Bhi07g01900 Tan04g0075 Cmetu10g0234 Lac13g0067 Hepe10g0096 . . . . . . . . . Cone13ag1136 Cone19ag1117 Cone8ag0740 . Lsi04g00666 . . Cme10g00643 Blo06g00829 . . . . . Bma01g00018 Bma06g00574 . . . Cma04g01823 . Car04g01836 . . . . . . . . . . Cla11g01354 Cam11g1412 Cec11g1438 Cco11g1436 Clacu11g1569 Cmu11g1389 Cre11g1810 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003521 0 9 3 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 48