Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1184 ATGGATATTCATGAGGTTGAAGAGAGTTTGTTCGCGGTCAGTGATGCCAAGTTACATGGAGGGATGTGCAGGATGCTCTCCACGATTTATTGCAAAATACTGGAAATTTTCCCTGTTCTGGAAGCAGCAAGGCCTAGGAGCAAATCAGGTATTCAGGCATTATGCTCATTGCACATAGCGCTGGAGAAGGCCAAGAATATTCTTCAGCATTGCTCAGAATGTAGTAAACTTTATTTGGCTATTACTGGTGATTCAGTGGCTTTAAAATTCGAGAAGGCACGATGTGCTCTTGCAGATAGTCTGAGGCGAGTTGAAGATATTGTTCCACAAACTATTGGTGTCCAGATTTCTGAGATAGTAAGTGAACTTGAGGGAACTGCATTCGCACTTGATCCATTGGAGAAGCAAGTTGGTGATGATATAATTGCATTGCTCCAGCAGGGCAGAAAATTCAACAACAGCAATGACAATAATGAGCTCGAGTCTTTTCACCAAGCTGCTTCTAGACTTGGTATCACCTCTTCAAGAGCAGCCCTTACAGAGAGAAGAGCTCTTAAGAAGCTCATAGAAAGAGCTCGTATTGAGGAAGACAAGCGGAAAGAATCAATTGTTGCTTATCTTTTACATCTCATGAGAAAATACTCTAAGTTATTTAGAAGTGAGTTATCAGATGACAATGATTCACAGGGTTCGGCTCCTTGTTCGCCGACTGTTATGGGTTCTCTTGAAGATGGTGTTGGACCTGCAGTCTATGGTCATGCCTTTGAGAGACAGCTCTCAAAACTTGGTTCTTTCAATTTCAAGCCAAATAATAGGAGATCTGGGCAGATGCCTCTTCCACAAGAAGAGTTGAGGTGTCCAATATCATTGCAGCTCATGTATGATCCAGTGATAATATCTTCTGGGCAAACGTATGAAAGAATCTGCATTGAGAAATGGTTCAGTGATGGGCACAACACTTGCCCGAAAACTCAACAGCAGCTATCTCATCTTTGTCTAACTCCTAATTACTGTGTTAAGGGTCTCATTGCGAGCTGGTGTGAACAGAATGGAGTTCCTGTTCCTGATGGCCCTCCAGAGTCTCTTGATCTCAACTACTGGAGGCTCGCTTTGTCTGAGTGTGAGTCAACAAATTCGAAATCAATGGACAGCATTGGTTCCTGCAAGATGAAGGGGGTAAAGGTGGTTCCTTTAGAGGAGAGTGGCATAATTGAGGAGGTCGAGGGAAATGAAATGGAAAATGTGCATGAACAGGATGAAGAGTCTGAAAACGTGTTTGAAAGATATGAGAACTTTCTGGCTATCTTGGATGGAGAGGAAGACTTGAGGAAAAAGTGCAAGGTGGCAGAACAGATCAGACACTTGCTAAAGGACGATGAGGAAGCCAGGAATTTTATGGGAGCTAATGGGTTTGTTGAAGCATTGATGCGCTTTTTAGAGTTGGCTGTGCGAGGAAGGAATGAAATGGCTCAGGAAATTGGGGCTATGGCTCTGTTCAATCTTGCTGTTAACAATAACAGAAACAAGGAACTGATGTTGGCATCGGGAGTACTCCCATTGCTTGAGGAAATGATCCCCAATTCCAACTCCCATGGATCAGCTACAGCCCTCTACCTGAACCTTTCTTGTCTTGAAGAAGCCAAGCCCATGATTAGCACAAGCCAAGCTGTCCCCTTTTTAATCCATCTGCTTGGAGCTAAAACTGAACCGCAATGCAAGCTTGATGCCCTCCATGCCCTCTATAATCTCTCCACCCATCCTGCCAATATCCCCAACCTACTTGCAGCTGGCATTATCAGCGGCCTCCATTCCCTTCTCACAGACCCGGCTGACAACACATGGACAGAAAAAACCTTGGCTGTCTTTGTAAACTTGGCTTCAAATAAATTAGGAAAAGATGAAATCATGAAATGCAGTCAGATGGTCCTCCAAGAAGGGGTGATACCTGCATTGGTTTCCATATCAGTGAATGGGACCGTGAGAGGGAAAGAAAAGGCTCAGAAACTTCTGATGCTGTTTCGGGAGCAGCGGCAGCGAGACCCATCACCTGTTGGGAGTCCTCATCATACTGAAAGCAGTACCGAGGCTGTGCCTGCCATTGGAATCCAAGCCATATTGTAA 2121 44.51 MDIHEVEESLFAVSDAKLHGGMCRMLSTIYCKILEIFPVLEAARPRSKSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDSVALKFEKARCALADSLRRVEDIVPQTIGVQISEIVSELEGTAFALDPLEKQVGDDIIALLQQGRKFNNSNDNNELESFHQAASRLGITSSRAALTERRALKKLIERARIEEDKRKESIVAYLLHLMRKYSKLFRSELSDDNDSQGSAPCSPTVMGSLEDGVGPAVYGHAFERQLSKLGSFNFKPNNRRSGQMPLPQEELRCPISLQLMYDPVIISSGQTYERICIEKWFSDGHNTCPKTQQQLSHLCLTPNYCVKGLIASWCEQNGVPVPDGPPESLDLNYWRLALSECESTNSKSMDSIGSCKMKGVKVVPLEESGIIEEVEGNEMENVHEQDEESENVFERYENFLAILDGEEDLRKKCKVAEQIRHLLKDDEEARNFMGANGFVEALMRFLELAVRGRNEMAQEIGAMALFNLAVNNNRNKELMLASGVLPLLEEMIPNSNSHGSATALYLNLSCLEEAKPMISTSQAVPFLIHLLGAKTEPQCKLDALHALYNLSTHPANIPNLLAAGIISGLHSLLTDPADNTWTEKTLAVFVNLASNKLGKDEIMKCSQMVLQEGVIPALVSISVNGTVRGKEKAQKLLMLFREQRQRDPSPVGSPHHTESSTEAVPAIGIQAIL* 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19925331 19930565 - Vvi1g1184 Vvi1g1184 770384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1184 706 CDD RING-Ubox_PUB 284 326 IPR045210 -
Vvi1g1184 706 Gene3D - 433 680 IPR011989 -
Vvi1g1184 706 PANTHER U BOX DOMAIN-CONTAINING 1 636 - -
Vvi1g1184 706 PANTHER U BOX DOMAIN-CONTAINING 637 686 - -
Vvi1g1184 706 SUPERFAMILY ARM repeat 420 660 IPR016024 -
Vvi1g1184 706 Pfam U-box domain 282 350 IPR003613 GO:0004842|GO:0016567
Vvi1g1184 706 SUPERFAMILY RING/U-box 280 356 - -
Vvi1g1184 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Vvi1g1184 706 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Vvi1g1184 706 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 636 - -
Vvi1g1184 706 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 637 686 - -
Vvi1g1184 706 SMART arm_5 544 585 IPR000225 GO:0005515
Vvi1g1184 706 SMART arm_5 586 627 IPR000225 GO:0005515
Vvi1g1184 706 SMART arm_5 505 543 IPR000225 GO:0005515
Vvi1g1184 706 SMART arm_5 459 503 IPR000225 GO:0005515
Vvi1g1184 706 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1184 - - vvi:100256374 1366.29