Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1186 ATGAGGGAGGAGGGCATTGCGTTTCTTCTACTCCCTTGCTATCTCTTCCCTTCCTCCGCCGTTGACGACGCCGCCTCCGCCTTCTCCGACTGGAACGAGGACGACCCCAACCCCTGCCGCTGGACCGGCATTTCCTGCATGAATGTCTCCGGCTTCTCCGACCCCCGCGTCGTCGGAATTGCGATCTCCGGTAGGAATCTCCGTGGGTATATTCCGTCTGAATTGGGGAATCTTTTCTATCTCCGGCGGCTCAATCTTCATGGGAATAACTTTTACGGGTCAATTCCGGTTCAGTTGTTTAATGCTTCGTCTTTGCATAGTATTTTTTTGTATGGGAATAATCTCTCCGGTACTCTCCCGCCGGCGATGTGTCAGCTGCCCAGGTTGCAGAATGTCGATTTTTCCAATAATTCGCTGTCGGGATCGATTCCGGAGGGTTTGAAGAAGTGTAAACAGTTGCAGAGGTTGGTCGTCACCCGGAATCAATTTTCCGGCGAAATTCCGGAGGGGATTTGGCCGGAGATGGAGAATTTGGTTCAGCTCGATCTGTCGTCGAATGAGTTCAACGGATCGATTCCTGATGATATCGGTGAGCTGAAGTCGCTCTCCGGAACTCTGAACCTCTCTCACAACCATTTCACAGGAAAGATTCCAAAATCGCTCGGGAACCTGCCGGAGACGGTGAGTTTCGACCTCCGGAGCAACAATCTCTCCGGCGAAATCCCCCAGACCGGCGCGTTTGCCAACCAAGGCCCCACCGCATTCCTCAACAACCCCGACCTCTGCGGCTTCCCCCTCCAGAAATCCTGCCGGAACCCATCCCGGAGTTCTCCGGAGGGTCAGAGCTCATCCCCAGAATCTGGCACCAATGCAAGAAAAGGCCTGAGCCCAGGTTTGATCATCCTAATATCCGTCGCTGACGCCGCCGGAGTGGCTTTCATTGGCTTGATCATAGTGTACATATACTGGAAAAACAGGGATTCACAGGGCTGCAGCTGCACCGGCAAAGAAAAACTCGGCAGTACCGGAAGATCCGCTTTGTGTTCGTGCCTTTCTGCCCACAGTTTTCAGAATAATGACTCCGAAATGGAATCAGATAAGGAAAGAGGAGGCAAAGGAGCAGAGGGTGATCTTGTAGCCATTGACAAAGGCTTCAGTTTTGAACTGGATGAGCTTTTAAGGGCATCAGCCTACGTGTTAGGAAAGAGTGGTTTGGGGATTGTGTACAAGGTGGTGCTCGGAAATGGAGTTCCAGTGGCGGTGAGGCGGTTGGGGGAGGGTGGGGAGCAGAGGTACAAGGAATTTGTGGCTGAGGTTCAGGCTATTGGGAGAGTGAAGCACCCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGGGAGAAGTGGACAGCCATCATCGAGCCTCTCATGGTCAACCAGGCTGAAAATTGCCAAGGGAACAGCCCGGGGCTTGGCCTACCTGCATGAATGCAGTCCAAGAAAGTTTGTCCATGGAGACATAAAACCCTCCAACATCCTCCTTGACAACGAATTCCAGCCCTATATCTCTGATTTTGGCCTCAACAGACTAATTACAATCACAGGCAACAACCCTGCCTCATCCGGTGGCTTCATTGCCCCAGAGGCTCGGGTTGCCAACAGCCGCCCTACACAAAAATGGGATGTCTACTCATTTGGGGTTGTATTACTTGAACTGCTGACCGGAAAATCCCCAGAGCTCTCCTCTCCAACCACATCAACATCCACAGAAGTCCCAGATCTAGTGAAGTGGGTGAGGAAAGGATTTGAAGAGGAGAATCCCCTTTCAGATATGGTAGACCCCTTGTTGCTCCAAGAAGTGCAAGCCAAGAAGGAGGTGCTAGCAGTGTTTCATGTGGCCCTTGCCTGCACTGAGGGAGACCCAGAACTTCGGCCTAGGATGAAGACTCTCTCAGAAAACCTAGAAAGAATTGGATCATAA 2025 51.75 MREEGIAFLLLPCYLFPSSAVDDAASAFSDWNEDDPNPCRWTGISCMNVSGFSDPRVVGIAISGRNLRGYIPSELGNLFYLRRLNLHGNNFYGSIPVQLFNASSLHSIFLYGNNLSGTLPPAMCQLPRLQNVDFSNNSLSGSIPEGLKKCKQLQRLVVTRNQFSGEIPEGIWPEMENLVQLDLSSNEFNGSIPDDIGELKSLSGTLNLSHNHFTGKIPKSLGNLPETVSFDLRSNNLSGEIPQTGAFANQGPTAFLNNPDLCGFPLQKSCRNPSRSSPEGQSSSPESGTNARKGLSPGLIILISVADAAGVAFIGLIIVYIYWKNRDSQGCSCTGKEKLGSTGRSALCSCLSAHSFQNNDSEMESDKERGGKGAEGDLVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFVAEVQAIGRVKHPNVVKLRAYYWAPDEKLLISDFISNGNLANALRGRSGQPSSSLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNEFQPYISDFGLNRLITITGNNPASSGGFIAPEARVANSRPTQKWDVYSFGVVLLELLTGKSPELSSPTTSTSTEVPDLVKWVRKGFEEENPLSDMVDPLLLQEVQAKKEVLAVFHVALACTEGDPELRPRMKTLSENLERIGS* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19953544 19957705 + Vvi1g1186 Vvi1g1186 770386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1186 674 ProSiteProfiles Protein kinase domain profile. 394 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1186 674 Gene3D Transferase(Phosphotransferase) domain 1 470 674 - -
Vvi1g1186 674 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 19 673 - -
Vvi1g1186 674 MobiDBLite consensus disorder prediction 268 291 - -
Vvi1g1186 674 Gene3D Ribonuclease Inhibitor 172 272 IPR032675 -
Vvi1g1186 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vvi1g1186 674 MobiDBLite consensus disorder prediction 269 291 - -
Vvi1g1186 674 SUPERFAMILY L domain-like 20 267 - -
Vvi1g1186 674 SMART serkin_6 398 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1186 674 Gene3D Phosphorylase Kinase; domain 1 378 469 - -
Vvi1g1186 674 Pfam Leucine Rich Repeat 205 224 IPR001611 GO:0005515
Vvi1g1186 674 Gene3D Ribonuclease Inhibitor 16 171 IPR032675 -
Vvi1g1186 674 Pfam Leucine rich repeat N-terminal domain 20 46 IPR013210 -
Vvi1g1186 674 Pfam Protein kinase domain 399 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1186 674 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 673 - -
Vvi1g1186 674 SUPERFAMILY Protein kinase-like (PK-like) 399 669 IPR011009 -
Vvi1g1186 674 CDD STKc_IRAK 400 672 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76488 PF00069 Pkinase 2.10E-33 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1186 - - vvi:100263011 1280.0