Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g119 ATGGCGAGAAACTCCGTTCTTCTGCGACACCTCCTTCGATTCTCTCCCTCGTCTCGCGCTCGTTCTTCTTCTCTGATCGAGACCCTAGCTTCATCTCCGATTGCTGTCCCATCCCCTCCCATTCATACAATTTCCTCCTTTTTCACCACCGCCACCGCTAACTCTCAGTTCTCGCGGCCTTGTTTGAATTACCGCACACTTTGCTCTTCCTCAGGTCAATCAAAAATTGCTCTGATTAAATCAGAAGAAGAGTTCAATACTTCACTTAGCAAGGTTCAAGATGAATCTTTGCCTGCAATTTTCTACTTCACTGCAGTATGGTGTGGGCCTTGCAGGTTTATAGCTCCTATCATAGCAGAGTTGAGTGAAAAGTACCCTCATGTCACCACATACAAGATTGACATTGATCAGGATGGGCTTGAAAACACCCTAAGAAGGTTAAATATTGCCTCCGTGCCAACACTCCACTTCTTTCAAAATGGGAAAAAGGCAGCTGAAATAATCGGTGCTGATGTTGCCCGCTTGAAGGATACCATGGATAAACTCTACAAGAAGGACTGA 561 45.45 MARNSVLLRHLLRFSPSSRARSSSLIETLASSPIAVPSPPIHTISSFFTTATANSQFSRPCLNYRTLCSSSGQSKIALIKSEEEFNTSLSKVQDESLPAIFYFTAVWCGPCRFIAPIIAELSEKYPHVTTYKIDIDQDGLENTLRRLNIASVPTLHFFQNGKKAAEIIGADVARLKDTMDKLYKKD* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1187498 1191134 + Vvi1g119 Vvi1g119 769319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g119 186 PANTHER THIOREDOXIN O1, MITOCHONDRIAL 1 184 - -
Vvi1g119 186 SUPERFAMILY Thioredoxin-like 70 184 IPR036249 -
Vvi1g119 186 ProSiteProfiles Thioredoxin domain profile. 55 184 IPR013766 -
Vvi1g119 186 Gene3D Glutaredoxin 71 184 - -
Vvi1g119 186 CDD TRX_family 83 171 - -
Vvi1g119 186 PANTHER THIOREDOXIN 1 184 - -
Vvi1g119 186 Pfam Thioredoxin 81 180 IPR013766 -
Vvi1g119 186 PRINTS Thioredoxin family signature 99 107 - -
Vvi1g119 186 PRINTS Thioredoxin family signature 107 116 - -
Vvi1g119 186 PRINTS Thioredoxin family signature 148 159 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g119 K03671 - vvi:100855130 353.599