Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1192 ATGATTGACTGCAGCATATATGAACGCATATTCAAGCGCTTTGATGAAGATGGAGATGGGAAACTCTCTCCTTCGGAGCTTCGACGCTGTTTTGTGGGGTGGATGGAAAGAGAGGGTGAAGAGAGAAAGATGGAGGAGTTGAGAGAGGCCTTTAGGATGTATGAGATGGAAGGGAGTGGGTGTATTACTGCAAAGAGCTTGAAGAGGATGCTGAGTAGATTGGGGGAGTCAAGAAGTGTGGAAGAATGCGGTGTTATGATCGGACAGTTTGATGTAAACGGGGATGGGGTTCTGAGCTTTGATGAGTTCAAGCTCATGATGCTTTAA 327 46.18 MIDCSIYERIFKRFDEDGDGKLSPSELRRCFVGWMEREGEERKMEELREAFRMYEMEGSGCITAKSLKRMLSRLGESRSVEECGVMIGQFDVNGDGVLSFDEFKLMML* 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20034282 20034705 + Vvi1g1192 Vvi1g1192 770392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1192 108 Coils Coil 37 57 - -
Vvi1g1192 108 CDD EFh 46 107 IPR002048 GO:0005509
Vvi1g1192 108 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Vvi1g1192 108 ProSiteProfiles EF-hand calcium-binding domain profile. 78 108 IPR002048 GO:0005509
Vvi1g1192 108 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Vvi1g1192 108 PANTHER CALCIUM BINDING PROTEIN 31 107 - -
Vvi1g1192 108 PANTHER CALCIUM BINDING PROTEIN 5 31 - -
Vvi1g1192 108 PANTHER CALCIUM-BINDING PROTEIN CML37 5 31 - -
Vvi1g1192 108 PANTHER CALCIUM-BINDING PROTEIN CML37 31 107 - -
Vvi1g1192 108 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vvi1g1192 108 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Vvi1g1192 108 Pfam EF hand 10 31 IPR002048 GO:0005509
Vvi1g1192 108 Pfam EF-hand domain pair 45 107 IPR002048 GO:0005509
Vvi1g1192 108 CDD EFh 7 72 IPR002048 GO:0005509
Vvi1g1192 108 Gene3D - 7 33 - -
Vvi1g1192 108 Gene3D - 34 108 - -
Vvi1g1192 108 SMART efh_1 46 74 IPR002048 GO:0005509
Vvi1g1192 108 SMART efh_1 6 34 IPR002048 GO:0005509
Vvi1g1192 108 SMART efh_1 82 108 IPR002048 GO:0005509
Vvi1g1192 108 SUPERFAMILY EF-hand 6 107 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1192 K13448 CML; calcium-binding protein CML - vvi:100247735 182.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000917 2 3 0 2 1 2 4 2 3 2 2 2 3 3 3 4 2 2 3 2 3 2 2 4 5 2 1 1 5 7 79