Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1197 ATGCAAGCTGTGAACACGATTCCTTCTCTGGTTGAATTGTCTTTGCTTGGATGTCAACTTAGTACATTTCCTCAGTCTCTCCCATTTGTTAATCTGACTTCTCTGTCGGTCCTTGACCTTAGTCACAACCATTTCAGACTTTCAGTACTATCATACCTAGCTGGTTGTTTAATCTCAGTAACCTCGCTATCCTTCAGCTTAGAATTACTTTTGAGGCTAAATCGCTTTCGTGGCAAGTTTCCCGAATCATTAGGCCATTTTAAGAATTTAATATCGATAGATTTGTCTGATAATGAATTGAGTGGCCAGTTACCTGATTCTTTAGGAAACCTTGAGAGGTTAAGATCTCTTGATCTTAGTAGCAACTTAATCTCGGGTTCACTTCCACCACCTATTGGACGGTTGTCTTTGTTGGAGAAATTGATTCTCTTTAACAATACAATGAATGGGACCATCCCAGAAAGTATAGGCCAACTTGAAGGGTTCAGCTCATCAGTATGCAGTATGGTGGATTTAAGTTCCAACCGCTTCGATTGTGGAATCCCACTTTGGTATAATCTGGCATATCTCTTTTTGAGAAACTACTTATTATCAGGTCCAATTCCCTTGAATATTGGGGAATTATCAAGCTTGAAAGTGCTAGCTGTTTCTGGTAACTTGTTAAATGGAAGCATCCCATCATCAATAAGTAAACTAAAGAATTTGGAGATTGTTGATCTCTCGGACAATCATTTATCTGGAAAAATTCCAATGCACTGGAATGATTTGCAACTACTAGAGGTCATAGATCTATCCATGAACAAATTGTCTGGCGGGATTCCGAGTTTGATATGTTCAATGCCTTCACTTTTCAGGTTGGAATTGTTTTTGGGGCAAAATCAATTCAATGGCCATTTTCCTGATTCCTTTGGATATCTTAAGAATTTAAGATTGATAGATGTGTTTGATAATCGATTAAGTGGCCAGATTCCCAATTCATTAGGACATCTTAAAAATATAAGATCGATAAATTTGTCGAAAAATGAATTGAGTGGACCGATTCCTGATTCAATAGGAAACCTTGGCAACTTAAGATCTCTTCTTCTTAGTGACAATGCAATCTCGGGTTCAATTCCACCATCCATTGGAAAGCTGTTGTTCTTGGAGGAATTGGACCTCTCTCACAACGGAATGAATGGGACCATCCCAGAAAGTATAGGACAACTTAAAGAGCTCCTTGCCTTAACACTTGATTGGAATTCTTGGAAAGGGACGCCTCCCAGCCCACTATCCTTCAGCACATCGCAGGGATGGAGTATGGCAGATTTAAGTTTCAACCGCTTAGAGGGTCCACTCCCACTTTGGTATAATTTGACATATCTCTTTTGCGAAACAATCTATTTTCAGGTCCAATTCCCTCCGATATTGGCGGGGAATTATCAAGTTTGA 1428 39.36 MQAVNTIPSLVELSLLGCQLSTFPQSLPFVNLTSLSVLDLSHNHFRLSVLSYLAGCLISVTSLSFSLELLLRLNRFRGKFPESLGHFKNLISIDLSDNELSGQLPDSLGNLERLRSLDLSSNLISGSLPPPIGRLSLLEKLILFNNTMNGTIPESIGQLEGFSSSVCSMVDLSSNRFDCGIPLWYNLAYLFLRNYLLSGPIPLNIGELSSLKVLAVSGNLLNGSIPSSISKLKNLEIVDLSDNHLSGKIPMHWNDLQLLEVIDLSMNKLSGGIPSLICSMPSLFRLELFLGQNQFNGHFPDSFGYLKNLRLIDVFDNRLSGQIPNSLGHLKNIRSINLSKNELSGPIPDSIGNLGNLRSLLLSDNAISGSIPPSIGKLLFLEELDLSHNGMNGTIPESIGQLKELLALTLDWNSWKGTPPSPLSFSTSQGWSMADLSFNRLEGPLPLWYNLTYLFCETIYFQVQFPPILAGNYQV* 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20085776 20097440 - Vvi1g1197 Vvi1g1197 770397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1197 475 Gene3D Ribonuclease Inhibitor 275 470 IPR032675 -
Vvi1g1197 475 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 397 - -
Vvi1g1197 475 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 287 457 - -
Vvi1g1197 475 SUPERFAMILY RNI-like 12 426 - -
Vvi1g1197 475 SMART LRR_typ_2 256 280 IPR003591 -
Vvi1g1197 475 SMART LRR_typ_2 32 57 IPR003591 -
Vvi1g1197 475 SMART LRR_typ_2 111 135 IPR003591 -
Vvi1g1197 475 SMART LRR_typ_2 306 330 IPR003591 -
Vvi1g1197 475 SMART LRR_typ_2 354 377 IPR003591 -
Vvi1g1197 475 SMART LRR_typ_2 208 232 IPR003591 -
Vvi1g1197 475 SMART LRR_typ_2 378 402 IPR003591 -
Vvi1g1197 475 Pfam Leucine Rich Repeat 332 354 IPR001611 GO:0005515
Vvi1g1197 475 Gene3D Ribonuclease Inhibitor 1 274 IPR032675 -
Vvi1g1197 475 Pfam Leucine rich repeat 68 124 IPR001611 GO:0005515
Vvi1g1197 475 PRINTS Leucine-rich repeat signature 90 103 - -
Vvi1g1197 475 PRINTS Leucine-rich repeat signature 232 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1197 - - K13468 vvi:100259600 314.694
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1197 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1