Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1199 ATGCAACTTGATGTTGAGGGGACAGAGAATGTTACGGATTTGAACTCTAGGCCTCTCAAGGTCTCCTCATGCTGCAAGCATTATGCTACTTATGATATTGATTCATGGCTTAACGTTTCTGAGCAAGATATGAAGGAGACTTTTTTCTCTCCATTTGAGAGAGACGAATGGGATCTTCACGGATACATAGTATCTGATTGTTATGGTCTTGAGGTGATTGTGGACAATCAAAACTACCTTAATGAGTCAAAGGTGGATGCTGTTGCAAAAACCCTACAAGCAGGGTTGGATTTGGAATGTGGCCATTACTATACTGATGCCCTTAACGAATCAGTCCTGACTGGGAAAGTGAGTCAGTATGAACTAGACCGGGCATTGAAGAATATTTATGTTCTGCTTATGAGGGTTGGATACTTTGATGGTATCCCGGCGTATGAGTCGCTTGGACTGAAGGATATCTGTGCTGCAGATCACATTGAGTTGGCAAGGGAAGCCGCAAGACAAGGGATCGTTCTTCTGAAGAATGATTATGAAGTTTTGCCATTAAAACCTGGAAAAAAGTTAGTATTGGTTGGGCCCCATGCCAATGCTACTGAAGTTATGATTGGAAACTATGCAGGTCTGCCCTACAAGTATGTATCTCCTCTTGAAGCCTTTTCTGCCATTGGAAACGTCACATATGCGACGGGCTGTTTGGATGCTTCATGCAGTAACGATACCTATTTCTCTGAAGCAAAAGAAGCTGCAAAATTTGCAGAAGTTACCATCATTTTCGTAGGAACTGACTTATCGATCGAGGCTGAGTTCGTAGATAGAGTTGATTTCCTACTCCCAGGCAACCAAACAGAGCTGATCAAACAAGTTGCTGAAGTCTCCAGTGGTCCTGTGATTCTTGTAGTCCTCAGTGGTAGCAATATTGACATCACTTTTGCTAAAAATAATCCCAGAATCTCAGCCATCCTCTGGGTTGGTTTTCCTGGGGAGCAAGGCGGACACGCCATTGCAGATGTTGTTTTTGGGAAGTATAATCCTGGAGGAAGACTACCAGTGACATGGTATGAAGCTGATTATGTTGCATGTTTAGAGACCCACATCATGGATGCAAAGACTCCTAGCCCACAAAAGAGAAGGATAAAATTATGGTCAGAAGTGAGACCTGAATGGATTCCTCCTTTCAGCCTCTTGTATATCCGTATTTCCAACTGCTATGTATCTCCCAAGTTCCCCAACTGGCTTAGAACTCAAAAAAGACTTAACACAATAGTTCTTAAAAATGTGGGGATTTCAGATACAATACCAGAATGGCTTTGGAAACTAGATTTTTCATGGTTAGATCTTTCTAAAAACCAATTGTATGGAAAGCTTCCCAACTCATTATCCTTTAGCCCAGGAGCAGTCGTGGTGGATTTAAGCTTCAACCGCTTGGTGGGCCGATTCCCACTTTGGTTTAATGTGATAGAGCTCTTTCTGGGAAACAATTTATTTTCTGGTCCAATTCCCTTGAACATCGGGGAATTATCGAGTTTGGAAATCCTTGATATTTCTGGTAACTTGTTAAATGGCAGCATCCCTTCATCAATTAGTAAACTAAAGGATTTGAACGAAATTGATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAGAATTGGAATGATTTGCACCATCTTGACACCATAGATCTATCTAAGAACAAACTGTCAGGTGGGATTCCAAGTTCGATTTGTAAAATATTAGCCAAATAA 1746 41.24 MQLDVEGTENVTDLNSRPLKVSSCCKHYATYDIDSWLNVSEQDMKETFFSPFERDEWDLHGYIVSDCYGLEVIVDNQNYLNESKVDAVAKTLQAGLDLECGHYYTDALNESVLTGKVSQYELDRALKNIYVLLMRVGYFDGIPAYESLGLKDICAADHIELAREAARQGIVLLKNDYEVLPLKPGKKLVLVGPHANATEVMIGNYAGLPYKYVSPLEAFSAIGNVTYATGCLDASCSNDTYFSEAKEAAKFAEVTIIFVGTDLSIEAEFVDRVDFLLPGNQTELIKQVAEVSSGPVILVVLSGSNIDITFAKNNPRISAILWVGFPGEQGGHAIADVVFGKYNPGGRLPVTWYEADYVACLETHIMDAKTPSPQKRRIKLWSEVRPEWIPPFSLLYIRISNCYVSPKFPNWLRTQKRLNTIVLKNVGISDTIPEWLWKLDFSWLDLSKNQLYGKLPNSLSFSPGAVVVDLSFNRLVGRFPLWFNVIELFLGNNLFSGPIPLNIGELSSLEILDISGNLLNGSIPSSISKLKDLNEIDLSNNHLSGKIPKNWNDLHHLDTIDLSKNKLSGGIPSSICKILAK* 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20110752 20122015 - Vvi1g1199 Vvi1g1199 770399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1199 581 PANTHER SUGAR HYDROLASE-RELATED 11 367 IPR044993 GO:0009044|GO:0045493
Vvi1g1199 581 Gene3D Ribonuclease Inhibitor 380 578 IPR032675 -
Vvi1g1199 581 Pfam Glycosyl hydrolase family 3 N terminal domain 54 129 IPR001764 GO:0004553|GO:0005975
Vvi1g1199 581 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Vvi1g1199 581 SUPERFAMILY L domain-like 391 574 - -
Vvi1g1199 581 Pfam Glycosyl hydrolase family 3 C-terminal domain 170 356 IPR002772 GO:0004553|GO:0005975
Vvi1g1199 581 Gene3D - 156 379 IPR036881 GO:0004553|GO:0005975
Vvi1g1199 581 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 170 354 IPR036881 GO:0004553|GO:0005975
Vvi1g1199 581 Gene3D - 53 147 IPR036962 GO:0004553|GO:0005975
Vvi1g1199 581 SUPERFAMILY (Trans)glycosidases 12 169 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1199 K15920 XYL4; xylan 1,4-beta-xylosidase [EC:3.2.1.37] - vvi:100253564 692.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004165 0 1 0 1 1 2 0 1 1 1 1 1 3 1 1 4 1 0 1 1 1 2 1 2 2 1 1 1 2 8 43