Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g12 ATGGATTTGGTTCCACCATCTGAGCATCTTTGCTACGTCCGGTGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAAACGGCTGTTGGACACTGTGACAGTGAAATGTGGCCACTGCAGTAACCTCTCCTTTCTTAGCACCAGACCTCCACTGCAGGGCCAATGCCTTGACCATCAAATGAGCCTTCAGGGTGTTTGCAATGATTTCAGAAAGGGCCAGTCCTCATCATCATCTTCATCAACATCCAGCGAGCCAGTGTCCCCAAAAGCACCCTTTGTTGTAAAACCACCCGAAAAAAAACACAGACTCCCATCTGCTTACAATCGATTTATGAAGGAGGAAATACAACGCATCAAAGTAGCCAATCCTGAGATACCCCATCGAGAGGCTTTCAGTGCAGCAGCGAAAAATTGGGCTAGGTACATCCCAAATTCACCAGCAGGCTCAGTTTCTGAGAGCAGTAACAATGAATGA 483 47.41 MDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLDHQMSLQGVCNDFRKGQSSSSSSSTSSEPVSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKVANPEIPHREAFSAAAKNWARYIPNSPAGSVSESSNNE* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 237201 239435 - Vvi1g12 Vvi1g12 769212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g12 160 PANTHER PROTEIN CRABS CLAW 1 159 - -
Vvi1g12 160 PANTHER PROTEIN YABBY 6-RELATED 1 159 IPR006780 GO:0007275
Vvi1g12 160 Pfam YABBY protein 6 144 IPR006780 GO:0007275
Vvi1g12 160 MobiDBLite consensus disorder prediction 71 90 - -
Vvi1g12 160 MobiDBLite consensus disorder prediction 71 103 - -
Vvi1g12 160 Gene3D High mobility group box domain 80 148 IPR036910 -
Vvi1g12 160 SUPERFAMILY HMG-box 88 142 IPR036910 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14469 PF04690 YABBY 1.20E-51 CL0114 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g12 K25796 - vvi:100261225 324.709