Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g12 ATGGATTTGGTTCCACCATCTGAGCATCTTTGCTACGTCCGGTGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAAACGGCTGTTGGACACTGTGACAGTGAAATGTGGCCACTGCAGTAACCTCTCCTTTCTTAGCACCAGACCTCCACTGCAGGGCCAATGCCTTGACCATCAAATGAGCCTTCAGGGTGTTTGCAATGATTTCAGAAAGGGCCAGTCCTCATCATCATCTTCATCAACATCCAGCGAGCCAGTGTCCCCAAAAGCACCCTTTGTTGTAAAACCACCCGAAAAAAAACACAGACTCCCATCTGCTTACAATCGATTTATGAAGGAGGAAATACAACGCATCAAAGTAGCCAATCCTGAGATACCCCATCGAGAGGCTTTCAGTGCAGCAGCGAAAAATTGGGCTAGGTACATCCCAAATTCACCAGCAGGCTCAGTTTCTGAGAGCAGTAACAATGAATGA 483 47.41 MDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLDHQMSLQGVCNDFRKGQSSSSSSSTSSEPVSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKVANPEIPHREAFSAAAKNWARYIPNSPAGSVSESSNNE* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 237201 239435 - Vvi1g12 Vvi1g12 769212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g12 160 PANTHER PROTEIN CRABS CLAW 1 159 - -
Vvi1g12 160 PANTHER PROTEIN YABBY 6-RELATED 1 159 IPR006780 GO:0007275
Vvi1g12 160 Pfam YABBY protein 6 144 IPR006780 GO:0007275
Vvi1g12 160 MobiDBLite consensus disorder prediction 71 90 - -
Vvi1g12 160 MobiDBLite consensus disorder prediction 71 103 - -
Vvi1g12 160 Gene3D High mobility group box domain 80 148 IPR036910 -
Vvi1g12 160 SUPERFAMILY HMG-box 88 142 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g12 K25796 YAB; plant-specific transcription factor YABBY family protein - vvi:100261225 324.709
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g12 . 5 158 C2C2-YABBY Transcription Factor Family AT1G69180 63.5 2.9e-45 178.7
Vvi15g443 . 59 211 C2C2-YABBY Transcription Factor Family AT2G45190 68.7 2.6e-53 205.3
Vvi2g495 . 58 212 C2C2-YABBY Transcription Factor Family AT2G45190 61.1 3.1e-46 181.8
Vvi6g841 ECH 1 184 C2C2-YABBY Transcription Factor Family AT1G08465 66.7 4.8e-64 241.1
Vvi8g217 ECH 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 57.6 1.0e-50 196.8
Vvi11g495 . 5 170 C2C2-YABBY Transcription Factor Family AT1G08465 56.8 2.5e-44 175.6
Vvi2g495 . 15 188 C2C2-YABBY Transcription Factor Family AT1G08465 54.7 2.6e-41 165.6
Vvi15g443 . 15 187 C2C2-YABBY Transcription Factor Family AT1G08465 55.4 2.6e-41 165.6
Vvi15g443 . 27 208 C2C2-YABBY Transcription Factor Family AT4G00180 59.1 5.7e-53 204.5
Vvi2g495 . 25 209 C2C2-YABBY Transcription Factor Family AT4G00180 56.5 2.4e-51 199.1
Vvi1g669 . 2 172 C2C2-YABBY Transcription Factor Family AT1G23420 67.4 1.7e-51 199.9
Vvi11g495 . 7 168 C2C2-YABBY Transcription Factor Family AT2G26580 79.0 1.2e-69 259.6
Vvi6g841 ECH 8 167 C2C2-YABBY Transcription Factor Family AT2G26580 61.5 2.5e-48 188.7
Vvi8g217 ECH 5 165 C2C2-YABBY Transcription Factor Family AT2G26580 58.4 4.0e-46 181.4
Vvi15g443 . 16 175 C2C2-YABBY Transcription Factor Family AT2G26580 57.1 6.0e-42 167.5
Vvi2g495 . 15 176 C2C2-YABBY Transcription Factor Family AT2G26580 53.1 2.3e-41 165.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14469 PF04690 YABBY 1.20E-51 CL0114 Vvi TF