Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g120 ATGATAAAAAAAAATTTTAATATTACAAATGCTTCAAGCAGCGAAAGCGCGAGAAAGTGCGAGAAAATGGCGAGAAACTCCGTTCTTCTGCGACACCTCCTTCGATTCTCTCCCTCGTCTCGCGCTCGTTCTTCTTCTCTGATCGAGACCCTAGCTTCATCTCCGATTGCTGTCCCATCCCCTCCCATTCATACAATTTCCTCCTTTTTCACCACCGCCACCGCTAACTCTCAGTTCTCGCGGCCTTGTTTGAATTACCGTACACTTTGCTCTTCCTCAGGTCAATCAAAAATTGCTCTGATTAAATCAGAAGAAGAGTTCAATACTTCACTTAGCAAGGTTCAAGATGAATCTTTGCCTGCAATTTTCTACTTCACTGCAGTATGGTGTGGGCCTTGCAGGTTTATAGCTCCTATCATAGCAGAGTTAAGTGAAAAGTACCCTCATGTCACCACATACAAGATTGACATTGATCAGGATGGGCTTGAAAACACCCTAAGAAGGTTAAATATTGCCTCCGTGCCAACACTCCACTTCTTTCAAAATGGGAAAAAGGCAGCTGAAATAATCGGTGCTGATGTTGCCCGCTTGAAGGATACCATGGATAAACTCTACAAGAAGGACTGA 627 43.7 MIKKNFNITNASSSESARKCEKMARNSVLLRHLLRFSPSSRARSSSLIETLASSPIAVPSPPIHTISSFFTTATANSQFSRPCLNYRTLCSSSGQSKIALIKSEEEFNTSLSKVQDESLPAIFYFTAVWCGPCRFIAPIIAELSEKYPHVTTYKIDIDQDGLENTLRRLNIASVPTLHFFQNGKKAAEIIGADVARLKDTMDKLYKKD* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1191518 1197413 + Vvi1g120 Vvi1g120 769320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g120 208 Gene3D Glutaredoxin 93 206 - -
Vvi1g120 208 CDD TRX_family 105 193 - -
Vvi1g120 208 ProSiteProfiles Thioredoxin domain profile. 77 206 IPR013766 -
Vvi1g120 208 PRINTS Thioredoxin family signature 121 129 - -
Vvi1g120 208 PRINTS Thioredoxin family signature 129 138 - -
Vvi1g120 208 PRINTS Thioredoxin family signature 170 181 - -
Vvi1g120 208 PANTHER THIOREDOXIN 23 206 - -
Vvi1g120 208 Pfam Thioredoxin 103 202 IPR013766 -
Vvi1g120 208 PANTHER THIOREDOXIN O1, MITOCHONDRIAL 23 206 - -
Vvi1g120 208 SUPERFAMILY Thioredoxin-like 92 206 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g120 K03671 trxA; thioredoxin 1 - vvi:100261132 353.599
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g120 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013123 2 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 2 26