Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1214 ATGTTCCGATTCTTTTTTGGCAGATCTCTACAACCTAGAGGTCTTGCAGAAACATTGTGTGGTTCACCATTGTACATGGCGCCAGAGATAATGCAACTTCAGAAATATGACGCAAAGGCAGATCTCTGGAGTGTTTGTGCCATTATCTTTCAACTTGTGACTGGAAGAACACCGTTTACAAGAAACAATCATATACAGTTGCTCCAAAACATTGTTAAATATAGTGAATTGCATTTCCCTCCTGATAATAATGCTTTGAGTGCTAACTGCAAAGATTTGTGTCAGAAATTGCTGCGCCGCAATCCAGTGGAACGACTAACATTTGAAGAGTTGTTTAACCACCTATTCCTTTCTCAAAAGCAACCAGATGAAGCGTTAAGTAGGAGATCATCAAGAATAAATGATGGGTTTCCTTTTTCTGAATGCAATCCTGTGAGAAAAACAGAGGCAAGTTCTCAAGAGGATTGTATGTCTTTTCCTCTAGATGATGATTCTAGTGGTGCTGAAGGGAGCCCATCATTTTTGAGGAAGAGGTCCTCAATGAAGTCTACCTATGGATTTTCTCTTGATAACAAAGTTGATATAAGGGAAACAATATTTAACACTTCGAACAACACGGATCCTGCTTTTAAATACAACAGTACATCACATAAACCAGAAATTACTGGCTTTAGGATTGACAATCTTAGGCCTTCAAATGAGAATGTCAAAGAACCTCTAAAATCCATGGAACAAAGACCAATGAGAAGTTGTTCAAGAGTTGTGGATTCATTGGAGGAGTTGGTTGATCAAGATTATGTTTTTGTATCTGGACCCCCAATGGATGTATCATCTTCCTCAGCTATTGCTTCCAAGCCAAGTCATTCACAATGCAAATCAGGGAGTGCCCCTCTAACATCTGTAAATATGAAGACCAAATCAAGTGCACCAATGCCAATTGCTGGTGCAGGAATCACTAACACATGTTATACTGGAAGCTTGGAAAGTCATAGCTCGGCATCTTCTGGGACTTCACAAGGATCCATGGATATAGGAGATGCTTTAGAGCAACCATCAACTCACTGCATGACAAGGATTAAGTCATTGCAGCAATGTGCATCTGTCATCACTGAATTGGTAAATGAGAAGAAAACAGGGAGTTCTGGTTTTGATGGCATTTTTTGCTATGGCAGGTTCAAAAAATGGGATCAGTTGGGAGGTCAATTGATGTTGCAAGTTTTAAGAATTATGAAGAATTATGCTAGGCAATTGAATGCATGCTTGGAGTTGAAGATGTGCTCAACGACGAGAAAGGCTCAAGTTGGAAAATGGTGTATGTGGATTATGAGAATGATGTACTTCTTGTTGGGGATGATCCCTGGAAGTAAGTCTGTTCTGTTGTTTTGTGCATGCATGCACTGA 1401 39.76 MFRFFFGRSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVCAIIFQLVTGRTPFTRNNHIQLLQNIVKYSELHFPPDNNALSANCKDLCQKLLRRNPVERLTFEELFNHLFLSQKQPDEALSRRSSRINDGFPFSECNPVRKTEASSQEDCMSFPLDDDSSGAEGSPSFLRKRSSMKSTYGFSLDNKVDIRETIFNTSNNTDPAFKYNSTSHKPEITGFRIDNLRPSNENVKEPLKSMEQRPMRSCSRVVDSLEELVDQDYVFVSGPPMDVSSSSAIASKPSHSQCKSGSAPLTSVNMKTKSSAPMPIAGAGITNTCYTGSLESHSSASSGTSQGSMDIGDALEQPSTHCMTRIKSLQQCASVITELVNEKKTGSSGFDGIFCYGRFKKWDQLGGQLMLQVLRIMKNYARQLNACLELKMCSTTRKAQVGKWCMWIMRMMYFLLGMIPGSKSVLLFCACMH* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20564869 20568070 - Vvi1g1214 Vvi1g1214 770414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1214 466 SUPERFAMILY Protein kinase-like (PK-like) 16 125 IPR011009 -
Vvi1g1214 466 SMART serkin_6 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1214 466 MobiDBLite consensus disorder prediction 151 175 - -
Vvi1g1214 466 Pfam Protein kinase domain 9 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1214 466 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1B 4 377 - -
Vvi1g1214 466 Gene3D Transferase(Phosphotransferase) domain 1 4 158 - -
Vvi1g1214 466 MobiDBLite consensus disorder prediction 279 299 - -
Vvi1g1214 466 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1214 466 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 4 377 IPR045269 GO:0004674|GO:0006914
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1214 K08269 ULK2, ATG1; serine/threonine-protein kinase ULK2 [EC:2.7.11.1] - vvi:100266020 688.723
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1214 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00217 . . . . . . Cone14ag0689 Cone15ag0711 . . . . . . . . . . . . . . . . . . . . . Cpe17g01086 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76489 PF00069 Pkinase 8.90E-21 CL0016 Vvi PK