Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1219 ATGCCTGGTATTGTGGCTGGAAAAAAGAGATTCACCCAATCAAATATGTGTTTATCCAATTCAGTCCAGCAAGATACACTAACTCTTTCCAAAAGCAACCCCTGTTTAACTTCTCAATTCGCTGACGATTCTTACGGCCCCATTTTGCCTGGGCTGCCTGATGATGTGGCAAAATATTGCCTTGCACTTGTTCCTCGTTCTAACTTCCCAGCTATGGGTGGTGTCTCCAAGAAATGGAGGTCATTCATCCGAAGCAAAGAATTCATCACTGTAAGAAAACTAGCTGGGATGCTCGAAGAATGGCTCTATGTCTTGACTATGGATGCTGAAGGAAAGGGGAGCCACTGGGAAGTATTGGATTGTTTGGGACACAAACACCAGCTTCTCCCCCCAATGCCTGGCCCAGTTAAGACAGGATTTGAGGTGGTTGTTCTCAATGGAAAACTTCTTGTCATGGCTGGCTGTTCAGTTGTTGGTAGGACTGGCTCTGCCTCAGCAGACGTCTACCAGTATGATTCTTGCCTCAACAGTTGGAGCAAACTAGCAAACATGAATGTGGCTCGCTATGACTTCGCTTGTGCTGAAGTTAATGGCATGGTTTATGCTGTTGGTGGATATGGGGCAGACGGTGACAGTCTCTCCAGTGCAGAGATGTATGACGCTGATGCTGACAAATGGATCTTAATTGAAAGTCTCCGCCGCCCAAGGTACGGCTGCTTTGCATGTGGATTTGAGGGAAAACTCTATGTCATGGGTGGAAGGTCAAGTTTCACCATTGGAAACTCAAGGTTTGTTGACGTGTACAACCCTGAGAGGCACACCTGGTGTGAGATGAAGAACGGCCGTGTCATGGTCACAGCTCATGCCGTGCTGGGAAAGAAGCTCTTCTGTATGGAGTGGAAGAACCAGCGGAAACTCGCTATATTCAATCCAGAGGACAACTCATGGAAAATGGTACCAGTCCCATTAACTGGCAGCTCAAGCATTGGCTTCCGCTTTGGCATCCTGGAGGGTAAGCTTCTTCTCTTCTCACTAGAGGAGGATCCTGGCTATCGCACCCTGTTGTATGACCCGGATGCAGCCCCAGGCTCAGAATGGCAGACTTCTGAGATAAAGCCATCAGGTTCATGCTTATGCAGTGTGACAATCAAGGCATGA 1158 47.93 MPGIVAGKKRFTQSNMCLSNSVQQDTLTLSKSNPCLTSQFADDSYGPILPGLPDDVAKYCLALVPRSNFPAMGGVSKKWRSFIRSKEFITVRKLAGMLEEWLYVLTMDAEGKGSHWEVLDCLGHKHQLLPPMPGPVKTGFEVVVLNGKLLVMAGCSVVGRTGSASADVYQYDSCLNSWSKLANMNVARYDFACAEVNGMVYAVGGYGADGDSLSSAEMYDADADKWILIESLRRPRYGCFACGFEGKLYVMGGRSSFTIGNSRFVDVYNPERHTWCEMKNGRVMVTAHAVLGKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILEGKLLLFSLEEDPGYRTLLYDPDAAPGSEWQTSEIKPSGSCLCSVTIKA* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20661351 20663794 - Vvi1g1219 Vvi1g1219 770419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1219 385 Pfam F-box domain 51 88 IPR001810 GO:0005515
Vvi1g1219 385 PANTHER OS02G0202900 PROTEIN 1 385 IPR045887 -
Vvi1g1219 385 SUPERFAMILY Kelch motif 99 346 IPR015915 GO:0005515
Vvi1g1219 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Vvi1g1219 385 SMART kelc_smart 247 292 IPR006652 GO:0005515
Vvi1g1219 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Vvi1g1219 385 Gene3D - 86 383 IPR015915 GO:0005515
Vvi1g1219 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Vvi1g1219 385 Pfam Kelch motif 235 280 IPR006652 GO:0005515
Vvi1g1219 385 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Vvi1g1219 385 PANTHER KELCH REPEAT F-BOX PROTEIN 1 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1219 - - - vvi:100267636 798.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1219 Blo01g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00015 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008669 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 4 3 1 34