Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1221 ATGCGAGTCATAGTCGAAGATTCTAGAGTCGAAGACGGCGACGGCGGCGGCGACGGAGATGGCGATGGCGATGCCGTCAGGGTTGGGGTTGAGCTGCTGTGTGTGGTGAGAGCCGTGTTGAAGAAGATCAAGAGGAGGGTTTTGGTGGGAGATAAGGTGTTGGTTGGGTCGATAGATTGGGTGGATCGCCGGGGCGTGATTGAGAATGTGTTCTCGAGGAAATCGGAGATTCTGGACCCTCCAGTGGCCAATGTGGATCACCTGTTGGTGCTTTTCGCGATGGAGCAGCCAAAATTGGAGGTGTATTCGCTTACTCGGTTTTTGGTGGAGGCTGAGTCCACTGGGATTCCGATCACACTCGCATTGAACAAATCGGAACTCGTCGACGAAGAGACACGAGTTGCTTGGAAATCAAGGCTCCGAAGTTGGGGCTATGGGCCAGTTTTTTGCAGTGTTGAATCCAAGTTTGGACTTGATACTCTTGCATTCAGCTTGAGAGAACAAACAACTGTGATTGTAGGTCCAAGTGGAGTAGGGAAGTCTAGTCTCATAAATGCTTTGAGAAGCAACCACCCTCTTATTAATGTTTCTTCTGAAGAGAACAATTGGTTTGATTCTATTTTAGGGAGCAAATTGTTAGAAGAACAGCGTGTTGGGGAAGTGTCAGTAAGAAGTGGGAGAGGGAAGCACACTACTCGCCATGTATCCTTACTTCCGCTATCTGGAGGGGGATATCTTGCTGATACTCCTGGGTTTAACCAACCAAGCTTGCTGAAAGTAACAACTCAATCTCTTGCACAGACTTTCCCAGAGATCAGGAAATTGCTCAGTGGCAGTGCTAATGAACCTGAAAAATGCTCATTCAATGATTGCTTGCATCTTGGTGAGCCAGGGTGCGTTGTGAAAGGAGATTGGGAAAGATATCCATACTATTTTCAACTGCTTGATGAGATAAAAATCAGAGAAGAATTTCAGTTGAGGACCCTGGGAACCAAAAGAGAGGGTGATGTGAGGTACAAGACAGGTGATATGGGTGTCAAGCAAGCAGAACCACGACTTGAGCCTAAGAAGCACAGAAGACAATCTCGCAAGAGGATGAACCAGTCCATCCTAGACGAGTTGGACGACCTTGATGATGATGATAGCTTATTAGATGCTGAAGGTGACTCGATTTTAAATGAAATAGGCAATGAAAATCAGTAG 1203 46.8 MRVIVEDSRVEDGDGGGDGDGDGDAVRVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVDHLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYGPVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDSILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLAQTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQLRTLGTKREGDVRYKTGDMGVKQAEPRLEPKKHRRQSRKRMNQSILDELDDLDDDDSLLDAEGDSILNEIGNENQ* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20690928 20695341 + Vvi1g1221 Vvi1g1221 770421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1221 400 Pfam RsgA GTPase 70 257 IPR010914 GO:0003924|GO:0005525
Vvi1g1221 400 Gene3D - 69 257 IPR027417 -
Vvi1g1221 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 322 IPR027417 -
Vvi1g1221 400 ProSiteProfiles EngC GTPase domain profile. 83 253 IPR010914 GO:0003924|GO:0005525
Vvi1g1221 400 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1 381 IPR004881 GO:0003924|GO:0005525
Vvi1g1221 400 Gene3D Probable gtpase engc; domain 3 259 323 - -
Vvi1g1221 400 SUPERFAMILY Nucleic acid-binding proteins 29 74 IPR012340 -
Vvi1g1221 400 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 74 255 IPR030378 GO:0005525
Vvi1g1221 400 MobiDBLite consensus disorder prediction 341 400 - -
Vvi1g1221 400 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 14 322 IPR004881 GO:0003924|GO:0005525
Vvi1g1221 400 MobiDBLite consensus disorder prediction 373 387 - -
Vvi1g1221 400 MobiDBLite consensus disorder prediction 341 356 - -
Vvi1g1221 400 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g1221 400 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 47 191 IPR004881 GO:0003924|GO:0005525
Vvi1g1221 400 CDD YjeQ_EngC 83 316 IPR004881 GO:0003924|GO:0005525
Vvi1g1221 400 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 1 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1221 K06949 rsgA, engC; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] - vvi:100247229 751.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1221 Blo01g00361 . Bda01g02182 . Bpe13g00529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010562 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 32