Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1226 ATGGCGTTCAGGCTCAGCTCCGGTGACGTCACCGGGTTCAAGGTATTGTTCTCCATGGCGATTATGTACGGACTAATGGCTGTGCTGGTCTATTCCATTGTCCACATGCATTTCATCACGCCCCTGGGGATCGATGCCCCTCTCGATCGCTTCTCTGAGGGAAGAGCTCTCCAACACCTCCGAGTGTTGTCCCAGGAGATTGGCAGCCGCCAAGAAGGGAGTCCGGGTTTGAAAGAAGCTGCTCGGTATATTAAAGCACAATTGGAAGTGTTGAAGGAGAGAGCTGGTTCCAATATTAGGATTGAGATTGAGGAAACTATTGTTGATGGCTCCTTCAACATGATATTTTTAGGATATAGCATATCTTTGGGGTATAGAAATCATACAAATGTTATCATGAGGATATCATCTGTAAATTCGCAAGAGACTGATCCATCAGTTTTATTGAATGGCCATTTTGATAGTCCGCTTGGTTCTCCGGGTGCTGGTGATTGTGGTTCATGTGTTGCATCAATGCTTGAAATGGCAAGACTTACTGTTGACTCTGGCTGGGTCCCCCCTCGTCCCATTATTTTTCTTTTTAATGGCGCTGAAGAACTTTTTCTGTTGGGTGCACATGGATTCATGAAGACACATAAATGGAGTGATACAATTGGAGCTTTTATAAATATTGAAGCATCTGGGACGGGAGGTCTTGATTTAGTCTGCCAATCTGGACCTGGGTCTTGGCCTTCCCTTGTATATGCTCAGTCTGCAGTATACCCCATGGCACATAGTGCAGCTCAGGATGTTTTCCCTGTGATTCCTGGAGATACAGATTATAGAATATTTGCTGAAGATTATGGTGACATTCCTGGGCTAGATATTATCTTTCTTCTTGGTGGTTATTTTTATCATACCTCCTATGATACAATGGAGAGACTATTACCTGGAAGCATTCAAGCGCGTGGAGAAAATTTGTTAAGCATAACAAGGGCCTTTGCTAATTCCTCTAAGTTATTGAATGCTCATGAACGAGAATCTCTTAAAGTTGCTGCCAATGAACCCAAGGATGAGCGAGCTGTTTTCTTTGATTATTTATCATGGTTCATGATATTCTACTCAAGAAGGGCAGCTGTGGTGCTTCATACTATTCCAATTGCTATCTTCCTTCTTATGCCATTTCTTCTGTTTGTATTGAATATCGGAAAACGTACTTGGTTTTCAACATTCTATGACTTTTTTAAAGGATTACTGCTCCATACTATTGGAGTTGTGCTGGCAGTTGTCGTTCCAATTGTCTTTGCTATCCTGAGATTGTTGTTTTCTAATCATGCAATGAGCTGGTTTGCTCGCCCTTACCTTGCTTTCATGATGTTTATTCCCTGCTCACTTGTTGGTGTTTTGATTCCAAGAGTTGTTTGGAGAAGTGTTCCCCTCACACATGGTGTTTCACGTCTTCAAGCATCAAAGGAGGGACTATCTGATGATCCAAGGTTCTGGGGGGTGTTTGGGTTTTATGCTCTGTTGACCTTGGCCTATCTTGTAGCTGGATTGAGTGGAGGTTTCTTGACTTTTTCTCTGTCAGTTTCTATGCTTGCTGCATGGATCTCATTTCACTTTGCAGTCAAGCTTTTTGATTGTCAATCACTTAGATCAGCAATGTGCTACGTGTTACCTCTAATACCCTGCATCACGTACTCTGTCTACTTTGGTGGGTTTCTTGCCCAATTCTTGATTGAGAAGATGGGTATGATGGGTTCTATCCCACCCCCCTATGGATATTTCATTCCGGATATTATAGTGGCAGCAGTAATAGGATTAGTAACCAGTTGGTGTGTGGGCCCGCTAATACCTATTTGTGGTCACTGGCTTGCCAGATCATCCATCTTGAAATTCTTGTTGCAGCTTAGTGTGCTTGCCTTGGCTCTGTCATCGCAGTTCTTTCCTTATAGCATTGCTGCTCCTAAGAGGGTTGTTTTTCAGCATACATTCCTAACTGCAGATGCAAGTCGGGTAGTAGGCTCCAGTTATGATTTTTCTGTGGTTGATTCCAATTCTTTGCCTTTTCTTTTTGAACATGCCCCCGAAGTGGCAAAGGAACTAAACATGGGTTCAGAGTTGTCATTTAAAGCCACTAAGGACTCTCCTCGACAGACTTGGATGGTGCTCTTTCCAGTATCTTTCTTATTTTCAGGAAGCTTGAAGTTCCCTGCAAGAAGTGATGATATGTTGAAACACTACAGCTCTTTTCCCCATTTGTCTGCTTATAAGCCACATACGCTTTATGATGGGGGATCTCGTAGGGTTCATTTAGAATTTTACTTAGGTTCTTTAGAGGAGGTTTGGGTTTCAGTCCTTAACATTACTGGTCCTTTATCCAGTTGGTCATTTGCAGATAATGTACTTCCTGCTCCTGAATCACGTGGTGGTGGTCCACTTTCATACATTTGTAGACTCAGTGGAGCTAGCCATGAGAATTGGACCTTCTGGTTGGAGGCTAGCAGTTCTGAAGAGATAAGGGTGGAAGTTGCTGTATTAGATCAATATATGGTGGATGCAGCAAAGAAGTTAAAGGGCCTTTTTCCGAGCTGGGTGGATGTTACTGCTTATTCAAGCTTTTTGTCTAGTTATGTCTTCTAA 2622 42.79 MAFRLSSGDVTGFKVLFSMAIMYGLMAVLVYSIVHMHFITPLGIDAPLDRFSEGRALQHLRVLSQEIGSRQEGSPGLKEAARYIKAQLEVLKERAGSNIRIEIEETIVDGSFNMIFLGYSISLGYRNHTNVIMRISSVNSQETDPSVLLNGHFDSPLGSPGAGDCGSCVASMLEMARLTVDSGWVPPRPIIFLFNGAEELFLLGAHGFMKTHKWSDTIGAFINIEASGTGGLDLVCQSGPGSWPSLVYAQSAVYPMAHSAAQDVFPVIPGDTDYRIFAEDYGDIPGLDIIFLLGGYFYHTSYDTMERLLPGSIQARGENLLSITRAFANSSKLLNAHERESLKVAANEPKDERAVFFDYLSWFMIFYSRRAAVVLHTIPIAIFLLMPFLLFVLNIGKRTWFSTFYDFFKGLLLHTIGVVLAVVVPIVFAILRLLFSNHAMSWFARPYLAFMMFIPCSLVGVLIPRVVWRSVPLTHGVSRLQASKEGLSDDPRFWGVFGFYALLTLAYLVAGLSGGFLTFSLSVSMLAAWISFHFAVKLFDCQSLRSAMCYVLPLIPCITYSVYFGGFLAQFLIEKMGMMGSIPPPYGYFIPDIIVAAVIGLVTSWCVGPLIPICGHWLARSSILKFLLQLSVLALALSSQFFPYSIAAPKRVVFQHTFLTADASRVVGSSYDFSVVDSNSLPFLFEHAPEVAKELNMGSELSFKATKDSPRQTWMVLFPVSFLFSGSLKFPARSDDMLKHYSSFPHLSAYKPHTLYDGGSRRVHLEFYLGSLEEVWVSVLNITGPLSSWSFADNVLPAPESRGGGPLSYICRLSGASHENWTFWLEASSSEEIRVEVAVLDQYMVDAAKKLKGLFPSWVDVTAYSSFLSSYVF* 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20714758 20734567 - Vvi1g1226 Vvi1g1226 770426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1226 873 CDD M28_Fxna_like 48 367 - -
Vvi1g1226 873 SUPERFAMILY Zn-dependent exopeptidases 39 330 - -
Vvi1g1226 873 Gene3D Zn peptidases 47 338 - -
Vvi1g1226 873 Pfam Peptidase family M28 130 322 IPR007484 -
Vvi1g1226 873 PANTHER METALLOPEPTIDASE M28 FAMILY MEMBER 3 871 IPR045175 GO:0006508|GO:0008235
Vvi1g1226 873 PANTHER BNAA07G25020D PROTEIN 3 871 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1226 - - - vvi:100267769 1732.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1226 Blo01g00360 . Bda01g02181 . Bpe13g00530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00012 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006021 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 3 1 38