Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1227 ATGTACGATCTCCCCCGGCGGTTCCACGTCGGGATGTTGCGGCGCCGGAGCCCGGCAGATGAGTCGCCGGTGACGGCGGAGAATTTGCCGCCGTGGCCGTCGAATTCTGGACTGAAGAAGCAGCACAGTGTGGAGTATTGGATGATGGCTTCGCTTCTGTACGATGGGGGTGGCGGGAATGAGACCAGAGAGGCGGTTAGGGTTTGGGATCCGGAGATGGCTGATGCGTTCTTTGTGCCGTTTTTTTCGTCGTTGAGTTTCAATACTCATGGGCATAATATGACAGATCCGGATACGGAGTTCGATCGGCAATTGCAGATTGACATACTAAAGATTTTGAGGGAATCCAAGTACTGGCAGAGATCTGGAGGCAGGGACCATGTGATTCCCATGCATCATCCGAATGCTTTCAGATTTTTTCGGGAACAGGTGAACACATCTATTCTTATTGTTGCAGATTTTGGACGCTATCCTAAAGAGATATCAAACCTGAGGAAAGATGTGGTGGCCCCTTATGTGCACGTGGTTGATTCCTTTACAGATGATAATTCTCCAGACCCATATGAGTCCCGCACCACACTTTTATTCTTCAGGGGGAGGACAATCAGGAAAGATGAAGGAATTGTTCGTGATAAACTGGTTAAGTTGTTAGCTGGTCACACTCTACATGTGATTCATGTCCTTGCAGCCTGTACCTTACCATTGTCATTTGCTGAAAGTTCAATTTTTGAAGGGAGTGTTATGGCTGTTTATTATATTGTGGTGGGTTGGTGCTTAAGGTGTAGAAGCAAGAAAATTTCTATTGTGGAACTTTGGCAGAGCAAAGAATTGATCATACAGGTTGTCAAAGCAGCTGGATTTTTATCTAAACTTTGTTCTTGTCAACTTTGGGGTGTGCATTCCACTCAAGGGATGCGATCATCGAAGTTTTGTCTGCATCCAGCAGGAGACACCCCTTCATCTTGCCGCCTGTTTGATGCTATTGTGAGCCACTGCGTTCCAGTGATTGTGAGCGACCAAATTGAGCTCCCCTATGAGGATGAGATTGACTACACACAGTTCTCAATTTTCTTCTCTGATAAAGAGGCATTGGAACCAGGTTACATGATAGAGCAGCTCCGGCAAATTCCCAAAGAGAGATGGGTTGAAATGTGGAGGCATCTTAAGTACATCTCCCATCACTATGAATTCCAGTACCCCCCAAAGAAAGGAGACGCTATTGATATGCTATGGAGACAGGTAAAGCACAAGCTTCCCAGGGCCAACCTTGATGTACATAGAAGCCGAAGGTTGAAAGTTCCAGACTGGTGGGACCACAGGAGATAG 1326 46.76 MYDLPRRFHVGMLRRRSPADESPVTAENLPPWPSNSGLKKQHSVEYWMMASLLYDGGGGNETREAVRVWDPEMADAFFVPFFSSLSFNTHGHNMTDPDTEFDRQLQIDILKILRESKYWQRSGGRDHVIPMHHPNAFRFFREQVNTSILIVADFGRYPKEISNLRKDVVAPYVHVVDSFTDDNSPDPYESRTTLLFFRGRTIRKDEGIVRDKLVKLLAGHTLHVIHVLAACTLPLSFAESSIFEGSVMAVYYIVVGWCLRCRSKKISIVELWQSKELIIQVVKAAGFLSKLCSCQLWGVHSTQGMRSSKFCLHPAGDTPSSCRLFDAIVSHCVPVIVSDQIELPYEDEIDYTQFSIFFSDKEALEPGYMIEQLRQIPKERWVEMWRHLKYISHHYEFQYPPKKGDAIDMLWRQVKHKLPRANLDVHRSRRLKVPDWWDHRR* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20746044 20750153 + Vvi1g1227 Vvi1g1227 770427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1227 441 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 301 431 IPR004263 GO:0006486|GO:0016757
Vvi1g1227 441 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 1 221 IPR004263 GO:0006486|GO:0016757
Vvi1g1227 441 PANTHER EXOSTOSIN FAMILY PROTEIN-RELATED 301 431 - -
Vvi1g1227 441 PANTHER EXOSTOSIN FAMILY PROTEIN-RELATED 1 221 - -
Vvi1g1227 441 MobiDBLite consensus disorder prediction 15 36 - -
Vvi1g1227 441 Pfam Exostosin family 1 372 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1227 - - K23200 vri:117924700 704.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1227 Blo01g00359 . Bda01g02180 Bda11g00397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00397 . . Bma01g00011 Bma06g01354 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011254 1 1 1 1 0 1 2 1 1 0 0 1 1 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 31