Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1228 ATGGAGGCTAGAGGGTTTGTTGTTGATCTTGTTACCATAACATCCCTCTTGATTGGATTCCATAAGCAAGGTAGGTGGGATTGGACAGAGAGGCTCATGAAGCACATTAGGGATGGTAATCTAGTACCAAATGTCCTCAACTGGAAAGCCAACATGGAGGCTTATATGAAAGCCCCACAAAGCCGAAGAAAAGATTATACACCAATGTTCCCATCTGAAGGTAACTTGAGTGAAATCATGAGTTTAATTAGTTCTGCTGACACGGAGATGGATGGCAGCCCTGGTTCAGAAGAGGATGTGGCTCAACATGAGGATCAGTGGTCATCATCCCCATATATGGATCAATTGGCCAGTCAATTGAAGTCCATTGATGTTTCTTCTCAACTGCTCTCATTATCCAGAGGCCAACGAGTCCAGGCAAAAGGGATAGACTCATTTGACATTGATATGGTCAATACTTACCTATCAATATTCTTGGCCAAAGGAAAGCTGAGCTTAGCCTGCAAGTTGTTTGAGATATTTAGCAATATGGGTGTCGACCCTGTGATTTACACCTACAATTCCATGATGACTGCATTTGTCAAGAAGGGCTATTTCAATGAGGCATGGGGCGTTTTTCATGAAATGGGAGAGAAGGTCTGCCCACCAGACATAGCAACATACAATGTGATAATTCAAGGCTTGGGGAAGATGGGAAGAGCAGATCTAGCTAGTGCTGTTCTCGATATGCTAATGAAGCAAGGTGGATATCTTGACATTGTGATGTATAATACACTGATTAATGCTCTTGGGAAGGCTGGGCGGATTGATGAAGCAACCAAGCTTTTTGAGCAAATGAGGAGCAGTGGGATAAATCCCGATGTTGTCACTTTTAATACACTTATAGAAATTCATGCCAAGGCAGGTCAACTAAAGGCTGCATACAAGTTCTTAAAATTGATGTTGGATGCTGGATGCTCCCCCAACCATGTTACAGACACAACCCTGGATTTTCTGGGGAAGGAGATTGAGAAGTTGAGGTACAAAAAAGCATCAATCATACGCACTAGTAAAGATGATTCTTCTTGA 1068 42.6 MEARGFVVDLVTITSLLIGFHKQGRWDWTERLMKHIRDGNLVPNVLNWKANMEAYMKAPQSRRKDYTPMFPSEGNLSEIMSLISSADTEMDGSPGSEEDVAQHEDQWSSSPYMDQLASQLKSIDVSSQLLSLSRGQRVQAKGIDSFDIDMVNTYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVCPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTTLDFLGKEIEKLRYKKASIIRTSKDDSS* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20751548 20752616 - Vvi1g1228 Vvi1g1228 770428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1228 355 Gene3D Tetratricopeptide repeat domain 244 340 IPR011990 GO:0005515
Vvi1g1228 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Vvi1g1228 355 Pfam PPR repeat family 252 295 IPR002885 -
Vvi1g1228 355 Pfam PPR repeat family 183 229 IPR002885 -
Vvi1g1228 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Vvi1g1228 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vvi1g1228 355 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 350 - -
Vvi1g1228 355 Gene3D Tetratricopeptide repeat domain 1 84 IPR011990 GO:0005515
Vvi1g1228 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vvi1g1228 355 Gene3D Tetratricopeptide repeat domain 102 243 IPR011990 GO:0005515
Vvi1g1228 355 SUPERFAMILY HCP-like 158 318 - -
Vvi1g1228 355 PANTHER DEFECTIVE KERNEL35 1 350 - -
Vvi1g1228 355 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Vvi1g1228 355 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Vvi1g1228 355 TIGRFAM PPR: pentatricopeptide repeat domain 220 252 IPR002885 -
Vvi1g1228 355 TIGRFAM PPR: pentatricopeptide repeat domain 254 288 IPR002885 -
Vvi1g1228 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1228 - - - vvi:100266135 705.286
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010448 1 1 0 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 3 0 1 30