Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1233 ATGAACTGCCATGAACAACTCAAGACTGTTGCTGCAATGGTGGCTGTTAATTTTGCAATATCAGTGGCGAATGTACTTATTAAGATGATCCTCGACCAAGGAGCAAACCATTTGGTTGTCATCACATACAGACAGTCTATTTCTACTGTTTTTATATCCGCCGTAGCCTTCTTTCTGGAAAGGAAAAGCAGGCCAAAGCTCACATTTCGGATTTTATGTCACATTTTCGCTAGTGCCTTACTCGGGGCAACTCTCACGCAATACTTCTTCCTTCTTGGCCTTAAATACACATCTGCTACTTTTTCTTGTGCTTTCATCAACTTGGTGCCTGCAATCACATTCATACTGGCATTGGTATTCAAGCTAGAGAAAGTGAACTTAGGAAGCAAGTGTGGGAGAGCTAAGGTGTTGGGGACATTCATTTGCATTTGTGGAGCCTTATTGCTGGGGCTTTACAGAGGGATGCCATTAACAAACCCTGCATATCCCCAAGCAGAAATCCCTGGAACAAGCCATGCCAAGACCAGCATTTCATCCCACAGGACAAAGAGCTGGGCCACCGGTTCAATGGTTTTGACAGCAGCAAGTCTCACTTGGTCTTCATGGTTCCTTCTACAAGCCGGAATTAGCAAGAAGTACCCCTGCCAATATTCTAGTACCGCGATACTGTCCTTCTTCAGTGCCACCCAGGCAGCTATCTTAAGTTCAATTTTGGATAGGGACCTCTCCTCGTGGATTCTGAAAGGGAAGTTAGAGATCTCTAGTGTCATCTTTGCTGGGATTGTGGGATCAGGCTTGTGCTATGGGTTAATGTCATGGTGTGTAAATAAAAAAGGCCCGGTCTTCACTGCAGCATTCACCCCTTTCATACAGATATTTGTAGCCATCTTTGATTTCTCTATCCTGCATGAACAAATCCACCTTGGAAGTGTTCTGGGATCAATCCTAGTCATAGCTGGTTTGTACATTCTTCTGTGGGGTAAAAGCAAGGAGGAAGAGGATTGTGTGATGAAGCAGTCCCAAGTAGCTGAAGAAGATCCAGAATGTGATATGGCCCCACAAGTTTATATATTGGAAACAAGTGCATACCCAAGAGAGCATGAGCAGCTGAAAGGCCTCAGGGAGGCCACGGTAGAAAAGCATAAGTATTGGAGCCTGATGAATGTCCCTGTCGATGAAGGACTGTTCATTTCAATGCTTCTAAAGATCATGAATGCCAAGAAGACAATCGAGCTTGGAGTGTTCATTGGTTATTCTCTCTTGGCAACAGCTCTTGCCCTGCCTCAAGATGGCAAGATAATAGCGATTGATCCAGATAAAGAAGCGTACCAAACTGGAGTGCCATTTATCAAGAAGGCAGGTGTGGAGCATAAGATCAACTTCATTCAATCAGATGCAATGACAGTTCTAAACGATCTCATTGCCGATGGGAAAGAAGAAGGGACATTGGACTTTGCGATGGTGGATGCTGATAAGGAGAACTACCTCAACTACCATGAGCTGCTGCTAAAGTTGGTTAGAGTTGGAGGCATAATCGCTTACGATAACACTCTATGGTTTGGTTCAGTAGCGCGATCTGAAGAAGAAGAAATGATGGATTTTGAGAGAGCAGGCAGAGTCCATATCATGAAGTTGAACAAATTCTTGGCATCAGATCCCAGGGTTGAACTCTCACACCTTTCTATTGGAGATGGCGTCGCGCTCTGCAGGCGCCTCTATTAG 1722 44.66 MNCHEQLKTVAAMVAVNFAISVANVLIKMILDQGANHLVVITYRQSISTVFISAVAFFLERKSRPKLTFRILCHIFASALLGATLTQYFFLLGLKYTSATFSCAFINLVPAITFILALVFKLEKVNLGSKCGRAKVLGTFICICGALLLGLYRGMPLTNPAYPQAEIPGTSHAKTSISSHRTKSWATGSMVLTAASLTWSSWFLLQAGISKKYPCQYSSTAILSFFSATQAAILSSILDRDLSSWILKGKLEISSVIFAGIVGSGLCYGLMSWCVNKKGPVFTAAFTPFIQIFVAIFDFSILHEQIHLGSVLGSILVIAGLYILLWGKSKEEEDCVMKQSQVAEEDPECDMAPQVYILETSAYPREHEQLKGLREATVEKHKYWSLMNVPVDEGLFISMLLKIMNAKKTIELGVFIGYSLLATALALPQDGKIIAIDPDKEAYQTGVPFIKKAGVEHKINFIQSDAMTVLNDLIADGKEEGTLDFAMVDADKENYLNYHELLLKLVRVGGIIAYDNTLWFGSVARSEEEEMMDFERAGRVHIMKLNKFLASDPRVELSHLSIGDGVALCRRLY* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20788640 20805175 + Vvi1g1233 Vvi1g1233 770433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1233 573 PANTHER WAT1-RELATED PROTEIN 9 352 IPR030184 GO:0016021|GO:0022857
Vvi1g1233 573 CDD AdoMet_MTases 410 514 - -
Vvi1g1233 573 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 363 571 IPR029063 -
Vvi1g1233 573 PANTHER WAT1-RELATED PROTEIN 9 352 - -
Vvi1g1233 573 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 346 572 IPR002935 GO:0008171
Vvi1g1233 573 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 330 - -
Vvi1g1233 573 Pfam O-methyltransferase 359 572 IPR002935 GO:0008171
Vvi1g1233 573 Gene3D Vaccinia Virus protein VP39 337 573 IPR029063 -
Vvi1g1233 573 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 153 - -
Vvi1g1233 573 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Vvi1g1233 573 Pfam EamA-like transporter family 188 325 IPR000620 GO:0016020|GO:0016021
Vvi1g1233 573 Pfam EamA-like transporter family 11 149 IPR000620 GO:0016020|GO:0016021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1233 - - vvi:100254068 697.582