Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1238 ATGGTATTTTGTGAAATTTCTGAACAAGGGATGAGAATTGTTACCCGTAATCCTCGTGCATACCAAGTACCAACAACCTTCCTCATTGCATTATATATATACCTACCCTCATTTTCTTGTGCGGCAGGCTTAATTAAGTCTTCAACCATGTCCAGCTCAAGTCATAGGGGCATTCTCAAAACTGAAGCCCTCACAAAGTATCTATTGGAAACAAGTGCATACCCAAGAGAGCATGAGCAGCTGAAAGGCCTCAGGGAGGCCACGGTAGAAAAGCATAAGTATTGGAGCCTGATGAATGTCCCTGTCGATGAGGGACTGTTCATTTCAATGCTTCTAAAGATCATGAATGCCAAGAAGACAATCGAGCTCGGAGTGTTCACCGGTTATTCTCTCTTGGCAACAGCTCTTGCCCTGCCTCAAGATGGCAAGGCAAGGCTCTCTAGAAAAGAAAATAAAGCGTACCAAACTGGAGTGCCATTTATCAAGAAGGCAGGTGTGGAGCATAAGATCAACTTCATTCAATCAGATGCAATGTCAGTTCTAAATGATCTCATTGCCGATGGGAAAGAAGAAGGGACATTGGACTTTGCGATGGTGGATGCTGATAAGGAGAACTACCTCAACTACCATGAGCTGCTGCTGAAGTTGGTTAGAGTTGGAGGCATAATTGCTTACGATAACACTCTATGGTTTGGTTCAGTAGCGCGATCTGAAGAAGAAGAAATGATGGATTTTGAGAGAGCAGGCAGAGTCCATCTCATGAAGTTGAACAAATTCTTGGCATCAGATCCCAGGGTTGAACTCTCTCACCTTTCCATTGGAGATGGCGTCGCGCTCTGCAGGCGCCTCTATTAG 855 44.68 MVFCEISEQGMRIVTRNPRAYQVPTTFLIALYIYLPSFSCAAGLIKSSTMSSSSHRGILKTEALTKYLLETSAYPREHEQLKGLREATVEKHKYWSLMNVPVDEGLFISMLLKIMNAKKTIELGVFTGYSLLATALALPQDGKARLSRKENKAYQTGVPFIKKAGVEHKINFIQSDAMSVLNDLIADGKEEGTLDFAMVDADKENYLNYHELLLKLVRVGGIIAYDNTLWFGSVARSEEEEMMDFERAGRVHLMKLNKFLASDPRVELSHLSIGDGVALCRRLY* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20835861 20852573 + Vvi1g1238 Vvi1g1238 770438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1238 284 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Vvi1g1238 284 Pfam O-methyltransferase 70 283 IPR002935 GO:0008171
Vvi1g1238 284 PANTHER FLAVONOID 3',5'-METHYLTRANSFERASE-LIKE 54 284 - -
Vvi1g1238 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 61 282 IPR029063 -
Vvi1g1238 284 Gene3D Vaccinia Virus protein VP39 47 284 IPR029063 -
Vvi1g1238 284 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 57 283 IPR002935 GO:0008171
Vvi1g1238 284 PANTHER O-METHYLTRANSFERASE-RELATED 54 284 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1238 K00588 K13272 vvi:100233134 441.425