Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g124 ATGGTAATGAAGCCTGCATGGCTGGATGGTCTAATGGCCGAGACATTCTTTGCTGGTTGTGGGGTCCACGAGAATCGTAGGAAGAACGAGAAGAACGTTTTTTGCTTGGAGTGTTGTCAAAGCATCTGCCCTCACTGTCTTCCTTCTCATCGCTCTCATCCTCTCCTCCAGGTGAGGAGATATGTGTACCATGATGTGGTCAGATTGGATGACCTTGAGAAGCTCATTAACTGTTCTTATATTCAGCCTTATACTATAAACAGTGCCAAAGTTATATTCTTGAACCAGAGGCCACAGTCCAGGTCTTGTAAAGGCTCTGCCAATATTTGCTTCACTTGTGACAGGATTCTCCAGGAGCCATTCCGCTTCTGTTCCATTTCATGCAAGGTTGATTATATGGTGTACCAAGGGGAAGATTTGTCGAGCATTATATACAGGTTTGACGAATCCGATTTCGCCTACTCCCAATTCGAAGGCCTACGAATGGAGGACGAGGAGGGCCAAATTACCCCGAACTCCATCCTGGAGGACCCGTTACAGTTCAAGGCCTCGTCCTGCTCCTCCAACGAGACCTCGGGCAATTCAGGAATTTCACGAGATCCCGAGGCGGTGGTGAGGAAGAAGAAGAAATCAACCGGTTTTCTCCCCGGCAATTTTCTCTCCTTGAGCAGCAGAAGAAAGGGTGCTCCTCATAGGTCTCCTCTTTCTTAG 711 47.96 MVMKPAWLDGLMAETFFAGCGVHENRRKNEKNVFCLECCQSICPHCLPSHRSHPLLQVRRYVYHDVVRLDDLEKLINCSYIQPYTINSAKVIFLNQRPQSRSCKGSANICFTCDRILQEPFRFCSISCKVDYMVYQGEDLSSIIYRFDESDFAYSQFEGLRMEDEEGQITPNSILEDPLQFKASSCSSNETSGNSGISRDPEAVVRKKKKSTGFLPGNFLSLSSRRKGAPHRSPLS* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1219789 1221546 - Vvi1g124 Vvi1g124 769324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g124 236 Pfam PLATZ transcription factor 59 130 IPR006734 -
Vvi1g124 236 PANTHER - 5 236 - -
Vvi1g124 236 MobiDBLite consensus disorder prediction 184 198 - -
Vvi1g124 236 MobiDBLite consensus disorder prediction 184 236 - -
Vvi1g124 236 CDD Bbox2 20 58 - -
Vvi1g124 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 236 - -
Vvi1g124 236 ProSiteProfiles Zinc finger B-box type profile. 20 69 IPR000315 GO:0008270
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14470 PF04640 PLATZ 5.80E-28 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g124 - - vvi:100268160 488.804