Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1242 ATGGGTTCGCTCGCTCATCGAAAACTGGCCACCATGGCTGCTTCCTGTGGTGCAACTCGGCTCATGGCATTGAGCCTTGGTGTAACTCCAGTTATCATCAGTAGTCACCCGGACACGGCCAAAGAAATCCTATGTGGGTCTTCTTTCTCCAACCGGATTTTACAGAAGGGCTCTCTGAGTAACATCATGGAGAGTGTGTTTGGTAGGGGTTTAGGAAGTGTAGAAGGAGAGGGATTAGGGTTTATGGTGATAGAAGGATATGAATTGATTGCAAAATTCAATTGGGAAGATTACTTTCCACTAGGGTTTATAGACTTTTACGGGGTAAAGAGAAGGTGTAGTAAATTGGCAGCTAAGGTGAATGGTGTGGTGGGGAAGATGATAGAAGAAAGAAAAAGAGTTGGAGAGTTGAGTGGTGGTGGAAATGATTTTCTCAGTGTTTTGCTGTCTTTGCCAAAAGAGGATCAGCTGAGTGATTCAGATATGGTTGCTGTCTTGTGGGAGATGATATTTAGAGGCACAGACACAGTGGCCATTCTTCTTGAATGGATCATGGCCAGAATGGTTATACACCAAGACATCCAAGCAAAAGCCCAGGAAGAGCTTGACACGTGCCTTGGCAACCAGTCGCACGTGCAAGACTCTCACATTCAAAGCCTCCCTTATCTCCAAGCCATTGTGAAAGAGGCCCTCCGAATGCACCCTCCAGGCCCATTACTCTCATGGGCCCGGCTCGCGATCCATGATGTCCACGTAGGCAAGTTCTTTGTGCCAGCTGGCACAACTGCAATGGTCAATATGTGGGCCATAGCCCATGACCCGACAATTTGGAAAGATCCATGGGCCTTTAAACCAGATCGGTTCATTAACGAGGATGTGTCGATCATGGGTTCGGATCTAAGGCTGGCACCATTCGGGTCAGGTCGTCGGGCATGCCCGGGAAAGGCACTCGGTTTAGCCACGGTTCACTTATGGCTCGCTCGACTTCTCCATCAGTTCAAATGGCTCCCAACCCATCCCGTGGATCTTGGAGAATGCTTGAGGCTCTCCCTTGAAATGAAGAAACCTCTCATTTGTTGTGCAATTCCTCGAGTGTGA 1098 48.45 MGSLAHRKLATMAASCGATRLMALSLGVTPVIISSHPDTAKEILCGSSFSNRILQKGSLSNIMESVFGRGLGSVEGEGLGFMVIEGYELIAKFNWEDYFPLGFIDFYGVKRRCSKLAAKVNGVVGKMIEERKRVGELSGGGNDFLSVLLSLPKEDQLSDSDMVAVLWEMIFRGTDTVAILLEWIMARMVIHQDIQAKAQEELDTCLGNQSHVQDSHIQSLPYLQAIVKEALRMHPPGPLLSWARLAIHDVHVGKFFVPAGTTAMVNMWAIAHDPTIWKDPWAFKPDRFINEDVSIMGSDLRLAPFGSGRRACPGKALGLATVHLWLARLLHQFKWLPTHPVDLGECLRLSLEMKKPLICCAIPRV* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20910080 20913536 + Vvi1g1242 Vvi1g1242 770442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1242 365 PANTHER CYTOCHROME P450 78A7-RELATED 1 52 - -
Vvi1g1242 365 PANTHER CYTOCHROME P450 78A7-RELATED 52 364 - -
Vvi1g1242 365 Gene3D Cytochrome P450 2 361 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 Pfam Cytochrome P450 53 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS E-class P450 group I signature 161 178 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS E-class P450 group I signature 181 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS E-class P450 group I signature 224 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS E-class P450 group I signature 266 290 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS E-class P450 group I signature 302 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS E-class P450 group I signature 312 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PANTHER CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED 52 364 - -
Vvi1g1242 365 PANTHER CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED 1 52 - -
Vvi1g1242 365 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 305 314 IPR017972 GO:0005506|GO:0016705
Vvi1g1242 365 SUPERFAMILY Cytochrome P450 5 364 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS P450 superfamily signature 172 189 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS P450 superfamily signature 225 236 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS P450 superfamily signature 303 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1242 365 PRINTS P450 superfamily signature 312 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1242 - - - vvi:100257370 642.499
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1242 . . . . . . . . . Cmo18g00685 . Cma18g00699 . Car18g00648 . . . Bhi07g01922 . . . Hepe10g1518 . . . . . . . . . . . . . Lsi04g00679 . . Cme10g00659 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01341 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012995 0 1 0 0 1 1 1 0 1 1 1 0 1 1 1 1 1 2 1 0 1 1 0 1 1 1 1 1 1 1 24