Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1244 ATGCAAACCAAGAAAAAAATGCCTGGAAGAAATTCTGCTCGAGAGCATGCCAATCCCAGGGTTTCGAGATCTCAGAAGAAGGTATCTGAAACTGTACAAATTAAAGAACAGAAAGTAACTGAGATAATTGCATCCTCTACCCGAAGGCAGAGATTTGCTGGTTCGCTTTCCAAGAAATGTGAAGAGCCTGTTGCTGCAGGAAATTTGAATACCAGATACGGTTTGGTGCATGATGAGACCTTTGATGTTTGTTTGGGGTATAATGGAACTAGTGATGCTTCCATTGACTGTAAGAGCTACAACGAGGAAACTGCTGTGCCTGTGTTGGAAACTATATTTTCTCCTGCTTTTCACATGTCAAAAAGTGCTGGTGGGGAAATTGCTAGTGGAGCCGACTTCATCAAAATTCTCCGGAATGGAGACCAGAAATTTCATCAGGATTGTGAAATTGAGTATTCACATGTTGATACTCTGAACTGTCACTTTATCAAGAGAACTTCTGAATCCATTTGTAGAGATGAGAATTCCAATGAGAATACAATAACTTCAGTTAACACAACATGCCATAGTAATATGGAAGTGGATAAAAACATGCCATCCAAAAATGCAAATGTGGGTAACTGTGGTAGTCAGAAGCTTCCATCAGATGCAACTTCTATGAACTCATCTTGCAATGTGGACTTAGAAGGAAACAACCTGTCATCTGAAGTTTCAGCCATATATCTTGCCATGAAAAACTCTAAACTGGAATGTGTTGATGAGCATGGTCAAGATTCTATGTCAACTGATGGGTGCGTTGAGGATGATGACAGTGAGGAATTTGACGACTTCGATCCTTACTTATTCATAAAAAACTTACCAGATTTGTCATCCGTTGTTCCAACTTTCCGCCCCCTGCTGCTTCCTAAACAGACGCGGAGTTGTCCTCCAACTACTCTAGTTCTGGACTTAGATGAGACCTTAGTGCACTCTACACTAGAACCTTGTGATGATGCAGACTTCACATTCCCCGTTAATTTTAACCTCAAGGAGCATATGGTTTATGTTCGATGCCGTCCTCACCTCAAAGATTTTATGGAGAGGGTTGCCAGCCTTTTCGAAATAATCATATTTACGGCCAGCCAAAGCATCTATGCTGAGCAGCTCCTCAATGTCCTTGATCCAAAGAGGAGGTTCTTTCGTCATCGTGTTTATCGTGAATCCTGTGTTTTTGTGGAGGGAAATTACCTAAAGGATTTGTCAGTTCTTGGCCGGGATTTAGCACATGTCATCATAATTGACAACTCTCCACAGGCGTTTGGGTTTCAAGTGGACAATGGAATACCAATTGAGAGCTGGTTCAACGATCGTTCAGACCAAGAGTTGCTTTTACTTCTTCCATTTTTGGAGAGTTTAGTTGGAGTTGAAGATGTCCGGCCACTGATTGCTAAGAAGTTCAACCTTCGAGAGAGAATCAATGCTGCAGCTGTTTATCCTTTAGAATCAAATAGTGGGGATCCTTTTGAAAGGTGA 1512 41.47 MQTKKKMPGRNSAREHANPRVSRSQKKVSETVQIKEQKVTEIIASSTRRQRFAGSLSKKCEEPVAAGNLNTRYGLVHDETFDVCLGYNGTSDASIDCKSYNEETAVPVLETIFSPAFHMSKSAGGEIASGADFIKILRNGDQKFHQDCEIEYSHVDTLNCHFIKRTSESICRDENSNENTITSVNTTCHSNMEVDKNMPSKNANVGNCGSQKLPSDATSMNSSCNVDLEGNNLSSEVSAIYLAMKNSKLECVDEHGQDSMSTDGCVEDDDSEEFDDFDPYLFIKNLPDLSSVVPTFRPLLLPKQTRSCPPTTLVLDLDETLVHSTLEPCDDADFTFPVNFNLKEHMVYVRCRPHLKDFMERVASLFEIIIFTASQSIYAEQLLNVLDPKRRFFRHRVYRESCVFVEGNYLKDLSVLGRDLAHVIIIDNSPQAFGFQVDNGIPIESWFNDRSDQELLLLLPFLESLVGVEDVRPLIAKKFNLRERINAAAVYPLESNSGDPFER* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20925189 20932874 + Vvi1g1244 Vvi1g1244 770444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1244 503 PANTHER INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED 1 489 - -
Vvi1g1244 503 Gene3D - 297 480 IPR023214 -
Vvi1g1244 503 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 311 474 IPR011948 GO:0016791
Vvi1g1244 503 Pfam NLI interacting factor-like phosphatase 312 472 IPR004274 -
Vvi1g1244 503 MobiDBLite consensus disorder prediction 1 31 - -
Vvi1g1244 503 CDD HAD_FCP1-like 312 443 - -
Vvi1g1244 503 MobiDBLite consensus disorder prediction 8 31 - -
Vvi1g1244 503 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 489 - -
Vvi1g1244 503 SMART forpap2 309 453 IPR004274 -
Vvi1g1244 503 SUPERFAMILY HAD-like 300 476 IPR036412 -
Vvi1g1244 503 ProSiteProfiles FCP1 homology domain profile. 306 465 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1244 K17616 CTDSPL2; CTD small phosphatase-like protein 2 [EC:3.1.3.-] K12778 vvi:100262484 994.956
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1244 Blo01g00357 . . . Bpe13g00531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002827 1 3 1 1 2 1 3 1 1 1 1 1 2 2 2 2 1 3 2 1 1 2 2 2 1 2 2 4 5 2 55