Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1245 ATGGCCATACTCACCTTGTCTACAGACAACTACTTTGTTGTTGCACAGAAATTGAAGGAAGCAGAGATCACTGAGCAGGATTCTCTTCTTCTGACAAGGAACCTTCTCCGTATTGCCATATTCAATATTAGTTACATCAGAGGACTTTTTCCAGAAAAATATTTCAATGATAAGTCAGTTCCAGCCTTAGAGATGAAGATCAAGAAGCTTATGCCAATGGATGCAGAGTCACGCAGGCTGATTGATTGGATGGAAAAAGGCACATTGATTCTATTGATCTGA 282 39.72 MAILTLSTDNYFVVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLMPMDAESRRLIDWMEKGTLILLI* 94
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20933416 20934933 + Vvi1g1245 Vvi1g1245 770445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1245 93 Pfam HORMA domain 28 88 IPR003511 -
Vvi1g1245 93 Gene3D HORMA domain 15 91 IPR036570 -
Vvi1g1245 93 SUPERFAMILY The spindle assembly checkpoint protein mad2 22 86 IPR036570 -
Vvi1g1245 93 PANTHER MEIOSIS-SPECIFIC PROTEIN ASY1 14 88 - -
Vvi1g1245 93 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 14 88 - -
Vvi1g1245 93 ProSiteProfiles HORMA domain profile. 26 93 IPR003511 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1245 K12778 HORMAD, HOP1; meiosis-specific protein - vvi:100267642 148.673
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1245 . . . . Bpe13g00532 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069098 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1