Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1246 ATGTTCTGTGTGTGTGAAGCAATAGAAGGCCCGATGATTGAAGAATATGCATTTTCTTTCAGTTATTCAAATTCTGATAGTCAAGAGGTTTCAATGAATGTCAATCGCACTGGAACCAAGAAGGGAGGAACATTCAAGTGTAACTCCGCAACTGAAGTTACTCCCAATCAGATGAGGAGCTCTGCTTGTAAAATGGTCCGTACGCTGGTGCAATTGATGAGAACTCTAGATAGGATGCCAGAAGAGCGCACTATACTGATGAAACTCCTCTACTATGATGATGTGACGCCAGTGGACTATGAACCTCCTTTCTTTAGGAGCTGCACTGAAGAAGAAGCTCATATCTCATGGAACAAGAATCCTTTGAAAATGGAGGTTGGGAATGTGAACAGCAAACATCTCGTATTAGCTCTCAAGGTAAAGAGTGTGCTTGATCCTTGTGAGGATGAAAACGAAGATATCCAAAATGATGATGTGAGTTTGGGAGCTGATTCTGTACAAAGAGATGAGTATTCTGAATCTGACAGTGAGGTTAACCTTTCGCAAAGGGACCAATATATTGTTGCACCAGTAGATAAGCAGAAGCCACCTGAAGACACTGGTATGGTTGATGAAGATGATACCCAGGATTCGGTGGAAGATGAACAACAATTGAGCCGGGTGAAGGATTGGATCAGCTGTTGCCACCTTGACACCATTGAACTCACAGATGTTCTGTCAAATTTTCCCGACATCTCAGTGGTTTTGACTGAAGAAATTATGGACAAGCTTGTTAAAGAAGGTGTTCTATCAAAAACTGGAAAGGACGCTTACACCATCAAGAGGCAGAAGGAATGTGAGTATGAATTTGATGCTGTGAAAGAAGAAATGGGTGCTCAAGCACTTCCTATTAATGATAAAGTTGACCAGGCTATGGGAGAGGATCACATGTACATGAAGGCTTTGTACTATGCTCTTCCGATGAACTATGTGACAGTTCCTAAGCTTCAAAACATGCTCCAAGGACAAGCCAATCAGACTACTGTGCGCAAACTAATTGATAGAATGACCCAAGATGGATTTATTGATGCTAAAAGCAACCGAAGGCTAGGAAAGCGCGTGATCCATTCTGATCTGACTGAGAAAAAGCTAATTGAAGTCACAAAATCCTTGAACAATGAAGCTATGGATTTGGATGTCAGTGAGCCACATGACAACTCCAACCATCTAGGATTTCACACAAACGGAAGCAACCTCAAGGACATGTCCACATGCGGTGTCCTCCACTCCATTGGATCAGATCTCACGCGAATGAGAGGCAGATCAGACGTATATCAAAATGGCTCAATTAGGAGCGAGCAGACCATTTCAAAGACACTGGGGCAGGGGAACACTCCCACGAGCAGGGTTGAGCCAATAGCTTCAAGAGAGAGCTTTGCACCAGGGAGTGACAACACCAGAGCAAATGGAAATACAAATTACGGTGATGAGGTGGATGCCATTATCTGTAGTAGGTCCACCCAAGACAAGAGATCCAGGAAAGCAAGCACGGTGAAGGAGCCTATCCTTCAATACCTGAAGCGCCGGAAAGCTCAAGCTATCTGA 1584 43.69 MFCVCEAIEGPMIEEYAFSFSYSNSDSQEVSMNVNRTGTKKGGTFKCNSATEVTPNQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLLYYDDVTPVDYEPPFFRSCTEEEAHISWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCEDENEDIQNDDVSLGADSVQRDEYSESDSEVNLSQRDQYIVAPVDKQKPPEDTGMVDEDDTQDSVEDEQQLSRVKDWISCCHLDTIELTDVLSNFPDISVVLTEEIMDKLVKEGVLSKTGKDAYTIKRQKECEYEFDAVKEEMGAQALPINDKVDQAMGEDHMYMKALYYALPMNYVTVPKLQNMLQGQANQTTVRKLIDRMTQDGFIDAKSNRRLGKRVIHSDLTEKKLIEVTKSLNNEAMDLDVSEPHDNSNHLGFHTNGSNLKDMSTCGVLHSIGSDLTRMRGRSDVYQNGSIRSEQTISKTLGQGNTPTSRVEPIASRESFAPGSDNTRANGNTNYGDEVDAIICSRSTQDKRSRKASTVKEPILQYLKRRKAQAI* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20935035 20939592 + Vvi1g1246 Vvi1g1246 770446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1246 527 ProSiteProfiles HORMA domain profile. 1 140 IPR003511 -
Vvi1g1246 527 Pfam HORMA domain 2 133 IPR003511 -
Vvi1g1246 527 Gene3D HORMA domain 1 186 IPR036570 -
Vvi1g1246 527 PANTHER MEIOSIS-SPECIFIC PROTEIN ASY1 3 515 - -
Vvi1g1246 527 SUPERFAMILY Winged helix DNA-binding domain 317 387 IPR036390 -
Vvi1g1246 527 MobiDBLite consensus disorder prediction 150 211 - -
Vvi1g1246 527 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 3 515 - -
Vvi1g1246 527 SUPERFAMILY The spindle assembly checkpoint protein mad2 2 147 IPR036570 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1246 K12778 HORMAD, HOP1; meiosis-specific protein - vvi:100267642 1055.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002827 1 3 1 1 2 1 3 1 1 1 1 1 2 2 2 2 1 3 2 1 1 2 2 2 1 2 2 4 5 2 55