Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g125 ATGAGAGAACTGACGGCCGACGGTAACGCGGCGGCTCCTCCGCAAGCTCTTCTGGAGAGGCTCAAGGATTACGGCCAGGAGTATACTTTTGCCCTTTGGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAGAGTTTAGATCTTTCAAGGGTAGATCGGATCATTCGGTGTTCACTTCGATCTCAAGGGCTTCCGACGGCAGCAATTGAGCCGGTTCCAGAGAGTAGTGTGTCCACTGTAGAGGAGAGAACACTTGAAGAAAGAGAGAGATGGTGGAAGATGGGTTTGAAAGCCATCTCCGAAGGGAAGTTGGCGGTGGTTCTCCTATCTGGTGGGCAGGGAACTCGGCTTGGAAGTTCAGATCCAAAGGGATGTTTTAATATTGGACTTCCATCAGGAAAGTCACTCTTTCAACTTCAAGCTGAACGAATTTTGTGTGTTCAAAGACTTGCTGCTCAATCTACAAATGAGGGCTCAGGTGGTTTTGTGCCAATTCATTGGTACATTATGACGAGTCCATTTACTGATGATGTCACCCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGATCAAATCACCTTCTTCCAGCAAGGAACCATACCTTGTATTTCAAAGGATGGCAGATTCATCATGGAGACTCCCTACAAAGTAGCTAAGGCTCCAGATGGAAATGGAGGAGTATATTCAGCTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGTACTTAGATTGCTATGGAGTTGACAATGCACTGGTCCGTGTTGCTGATCCAACTTTCTTGGGTTATTTTATTGATAAAGGTGTAGCTTCAGCAGCAAAAGTTGTCCGTAAGGCATACCCCCAAGAAAAGGTCGGTGTGTTTGTAAGGCGAGGTAAAGGTGGACCTCTTTCCGTCGTTGAGTACAGTGAGTTGGATCCAACACTGGCTAGTGCAATCAATCAGGAAACTGGACGGCTTCGCTATTGTTGGAGTAATGTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGGTATTGCGTGAAGAAGAGTTTGCACCAGTAAAGAACGCCAATGGGTCAAACTTTGACACTCCCGATAGTGCTAAGCTGCTTGTTCTCAGACTCCATACTCGTTGGGTGGTGGCTGCAGGCGGCTTCTTGACGCATTCAGTGCCCTTATATGCAACTGGTGTGGAGATATCACCACTCTGCTCCTATTCTGGGGAAAACCTAGAAGCCATCTGCCGTGGAAGAACATTTCACGCTCCTTGTGAAATCTCATTCTAG 1458 45.82 MRELTADGNAAAPPQALLERLKDYGQEYTFALWDELSAEERDLLVKDIESLDLSRVDRIIRCSLRSQGLPTAAIEPVPESSVSTVEERTLEERERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQSTNEGSGGFVPIHWYIMTSPFTDDVTRKFFESHKYFGLEADQITFFQQGTIPCISKDGRFIMETPYKVAKAPDGNGGVYSALKSSRLLEDMATRGVKYLDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLSVVEYSELDPTLASAINQETGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIASTHGYTMGLKLEQFIFDAFPYAPSTALYEVLREEEFAPVKNANGSNFDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGVEISPLCSYSGENLEAICRGRTFHAPCEISF* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1226336 1240986 + Vvi1g125 Vvi1g125 769325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g125 485 Pfam UTP--glucose-1-phosphate uridylyltransferase 58 442 IPR002618 GO:0070569
Vvi1g125 485 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 10 481 IPR029044 -
Vvi1g125 485 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 3 484 IPR039741 -
Vvi1g125 485 CDD UDPGlcNAc_PPase 96 415 - -
Vvi1g125 485 SUPERFAMILY Nucleotide-diphospho-sugar transferases 16 483 IPR029044 -
Vvi1g125 485 PANTHER UDP-N-ACETYLGLUCOSAMINE DIPHOSPHORYLASE 1 3 484 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g125 K00972 - vvi:100256047 941.799