Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1250 ATGGCCTCTGTCTGTGCCTCCTCCGCCATGGCTGCTGTTGCCACCATCTCTCCCAGTTCTCAGAAGACTGGGTCTGTTGTGGGAGCAACCAAGGCCTCTTTTCTTGGGGGGAAGAGACTGAGCCTGAAGAAGTTCACGGCACCGGCAGCTGGGACGCGGTCTTTTACTGTATCCGCGGCGGCGGCAGATCCTAACAGGCCTCTTTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCAGCCTTCCTGGAGACTTTGGTTTCGATCCCCTTGGCCTTGGATCTGATCCAGAGACACTGAAATGGATGGTTCAGTCAGAGATAGTGCACTGCAGATGGGCAATGTTGGGAGCAGCTGGAATTTTCATCCCAGAGTTCCTAACAAAAATTGGGATACTAAACACCCCATCCTGGTACACTGCTGGAGAATTGGAGTACTTCACCGACAAAACCACACTCTTCATTGTTGAGATGATTTTCATCGGTTGGGCTGAGGGGAGAAGATGGGCTGACATCATCAAGCCTGGGTGCGTCAACACTGACCCCATTTTCCCCAACAACAAGCTCACCGGGACTGATGTTGGCTACCCAGGTGGGCTCTGGTTCGACCCTCTTGGCTGGGGAAGCGGTTCGCCCGACAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAAGCCATCTACACTGGCACTGGCCCCATTGACAACCTCTTTGCCCACCTTGCTGATCCCGGACATGCCACCATTTTTGCTGCTTTCACCCCCAAGTGA 816 53.8 MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAFTPK* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20954685 20957185 - Vvi1g1250 Vvi1g1250 770450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1250 271 SUPERFAMILY Chlorophyll a-b binding protein 61 269 - -
Vvi1g1250 271 Gene3D Chlorophyll a/b binding protein domain 76 261 - -
Vvi1g1250 271 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 271 IPR001344 GO:0009765|GO:0016020
Vvi1g1250 271 Pfam Chlorophyll A-B binding protein 75 241 IPR022796 -
Vvi1g1250 271 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 271 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1250 K08908 - vvi:100266036 555.058