Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1251 ATGAGAACCAGAAGAGGGGTTTGTTACCGTGAAGTGGACATGTGTACGGACAATAGAGTAGTGAAGAGAAGAGGGGATTTTTCCGGCGACAACGTCGTTTGCTGCCGGAAACGCCAGAGGCTAGCGCCGGAGTCCGCCGGAAAGTCTGATTTCTTTGAAGCCTTGCCAGATGATCTCGTCATTTGTATTCTCAGCAAACTCAGCTCCTCTGCTGGATGTCCTTCGGATTTCATCAACGTTTTGCTCACATGCAAAAGATTTAACGGATTAGGTCTTCATTCTCTAGTGCTATCCAGAGCTTCTTCGAAATCGCTCGCCGTTAGAGCGAAGAACTGGTCTGAGTCGGCTCTTCGGTTCTTGAAACTTTGCGCCGATGCCGGCAACGTCGAGGCGTGCTACACTCTTGGCATGATTCGTTTCTACTGTTTACAAAATCGAGTGAGCGGAGCTTCGCTGATGGCTAAAGCCGCTATAAGTTCGCACGCGCCGGCACTGTACTCGCTTGCCGTGATACAGTTCAACGGTAGCGTCGGCTCCAAGAACGACAAGGATCTTCGAGCCGGCGTGGCTCTCTGTGCCAGAGCTGCCTTCCTCGGCCACATCGACGCGCTTCGCGAACTTGGCCACTGCCTCCAAGACGGCTACGGCGTTCGCCAAAACGTTGCTGAAGGACGGCGGTTCCTTGTCCAAGCTAACGCCAGAGAGCTAGCCGCCGTCCTCTCCTCGGCATCTTCGGCAGTTTCCGATTTCGGCTGCAACGTGCCGGCACCGGAGGCGCATCCAGCAAGCCGCTTCTTGGCGGAGTGGTTCGCCGCTCGTGGTGGCGTTCCCGGTCCAGGGCTGAGGCTTTGCTCTCACGCCGGTTGTGGACGTCCGGAGATGAGACGACACGAGTTTCGTCGCTGTTCCGTGTGTGGTATCGTGAACTATTGCTCTCGCGCGTGTCAAGCACTCGACTGGAAGTTGCGCCACAAGGCGGCGTGCGCGCCGGTGGAGCGTTGGCTAGTCGACGACGGTGATGCTAACGGAGAAGGTGCTGTAGCCGGCGCCGCAGCGGAGGACGACGTCATCGCACGAGACCCGGCCCGTGCCGTTGCAACTAGAACACCTGGGAAATGGACCGGCCATCGGCTTCTGGTCCATGACCGACTTCACCAGAACCGCCCCGGCCAAGACGCTCAAGCCGGTGGCGAGCTGAGTCAATACGATCGGACTCATAACAATAGTAATGAAGAAAAGGAAGTTGCAGAGATGGGATGGCGTCGATGGGGAAGAAGGGTGAGGGGATTTTTATTTTTTTTTTGGTTATGGTAA 1314 56.09 MRTRRGVCYREVDMCTDNRVVKRRGDFSGDNVVCCRKRQRLAPESAGKSDFFEALPDDLVICILSKLSSSAGCPSDFINVLLTCKRFNGLGLHSLVLSRASSKSLAVRAKNWSESALRFLKLCADAGNVEACYTLGMIRFYCLQNRVSGASLMAKAAISSHAPALYSLAVIQFNGSVGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNVAEGRRFLVQANARELAAVLSSASSAVSDFGCNVPAPEAHPASRFLAEWFAARGGVPGPGLRLCSHAGCGRPEMRRHEFRRCSVCGIVNYCSRACQALDWKLRHKAACAPVERWLVDDGDANGEGAVAGAAAEDDVIARDPARAVATRTPGKWTGHRLLVHDRLHQNRPGQDAQAGGELSQYDRTHNNSNEEKEVAEMGWRRWGRRVRGFLFFFWLW* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20997838 21002039 + Vvi1g1251 Vvi1g1251 770451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1251 437 SUPERFAMILY HCP-like 110 231 - -
Vvi1g1251 437 SUPERFAMILY HIT/MYND zinc finger-like 283 333 - -
Vvi1g1251 437 PANTHER OSJNBA0044M19.1 PROTEIN 1 350 - -
Vvi1g1251 437 MobiDBLite consensus disorder prediction 388 415 - -
Vvi1g1251 437 ProSiteProfiles Zinc finger MYND-type profile. 286 328 IPR002893 -
Vvi1g1251 437 SUPERFAMILY F-box domain 44 96 IPR036047 GO:0005515
Vvi1g1251 437 Pfam MYND finger 288 328 IPR002893 -
Vvi1g1251 437 Gene3D Tetratricopeptide repeat domain 94 274 IPR011990 GO:0005515
Vvi1g1251 437 Gene3D - 280 332 - -
Vvi1g1251 437 PANTHER MYND DOMAIN-CONTAINING 1 350 IPR044508 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1251 - - - vvi:100260936 673.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60