Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1256 ATGGCAGCGACACAACAAGGCCCTGATCGCCTCATCCCAACAGGTTTTGATAATGTCACTGGTAAATGGAATGAATATTCTTCATATGTTAATGCTGAAGGCTTGGAAATTAGATCTTCTGGCATGTACAATGAAAATCCATCTGTTGTATTTGATGGTAATGGGTATAATCCTCAAATGCCATATGGACCATATCCAGAGACAACACAGCTGGCTTCTGCAAGGGGAGATGGGAAGTTACATGCTGCACAGCAGTTCTCAATCTCTGATCCACTTTCCTACCAGCAACCCATTGCTCCGAACATTCCATATGTTACTTCATCAACTCCTGTTTCACAAACAGAGCTACCTTCGGAAATTGGTAAGCAAGGGGATTGCAAACCTTTTGGCTTGAATCTGGGTTACCCACCTTCATTGGGATCATTTGGTAGCAGAAGCAACTTTTCTGAAAATTCTGATGGGCTAGGTTTCATGTCGGATGGGTCTGATGTGTTTGGATTTGGTAGTCTCTGGTCAGATTGCTCAATCCCCTTGAAGGAGCGGTCTAAGTTGTCATCACCAGCAGCATCTCAGCAGCCAGTTGGTTCACTGAATATGTCCAGGACTGATTTTGGAATGGCTTCTCAACAACATGGATCGCTTTCCAGATTTGGATCTCAGTCAAGCTTGAACTACAGGGGCTACAGTAGCAGTGGAATAAACCAAAGCTCTAGTTTCAGAAATACTTCCATATCCACTACTTCTGCCATGAATGGTTGGAACTGGCTTCCATATGATAAAGCAAAAAGTGGAGGAAACAGTGACACTTCATTTGGATGTACTGGTACAATTGATACTTTAATTGAGCAAAATCGAGGGCCTAGGGCATCAAAGCCAAAAAACCGAACAACTGCTAATGAGTCTTTTGTTAATAATAGCAAGAATGGAACATGTACTGGAGTCCACCGTGAGTCTTACAACCGTCTGGATTTTGTCACTGAGTACAAAGATGCAAAATTCTTCGTGATCAAATCTTATAGTGAAGACAATGTCCACAAGAGCATTAAGTATGGCGTGTGGGTTAGCACCCCAAATGGCAACAAAAGATTAAATTCTGCCTTTCATGAAGCCAAGGAGAAACATGGAAACTGTCCAATCTTTCTTTTGTTTTCGGTGAATGCTAGTGCCCAGTTCTGTGGGGTGGCCGAGATGGTGGGGCCTGTAGATTATGATAAAAGTGTAGATTATTGGAAGCAGGATAAGTGGACGGGCCAATTCCCTGTTAAGTGGCATATTATTAAAGATGTACCCAACAGTCAATTTCGTCACATTATACTTGAAAATAATGACAACAAACCAGTTACCAACAGCAGAGACACTCAAGAGGTGGAATTGGAGCAGGGTAATGAAATGTTGAACATATTCAGGAATTACGAAAGTGATTCATCCATCCTAGATGATTTCGACTTCTATGAAGACAGGCAGAAAGCCATGCAGGAAAAGAAGACCCAACATAAAGCAAGCCTGTTGGCTGCTCCAATGGTTGTAGGCAGTCAGCAACAAATTCGCCGGTCTCTCCCAACTCACCTCATACATAAAATGTCAAAGACCTTTGCTCAAGCTGTGTTGTTGAATGAGAATGACAAGGAGCGGTCACCAGCAGGAAAGGCGGTGCCTGGTGCAGCTCGCTTGAGGGGAAGCAGAGTAGAACCCGAAAAAACAAGGGCAACAATGGCATGA 1719 43.22 MAATQQGPDRLIPTGFDNVTGKWNEYSSYVNAEGLEIRSSGMYNENPSVVFDGNGYNPQMPYGPYPETTQLASARGDGKLHAAQQFSISDPLSYQQPIAPNIPYVTSSTPVSQTELPSEIGKQGDCKPFGLNLGYPPSLGSFGSRSNFSENSDGLGFMSDGSDVFGFGSLWSDCSIPLKERSKLSSPAASQQPVGSLNMSRTDFGMASQQHGSLSRFGSQSSLNYRGYSSSGINQSSSFRNTSISTTSAMNGWNWLPYDKAKSGGNSDTSFGCTGTIDTLIEQNRGPRASKPKNRTTANESFVNNSKNGTCTGVHRESYNRLDFVTEYKDAKFFVIKSYSEDNVHKSIKYGVWVSTPNGNKRLNSAFHEAKEKHGNCPIFLLFSVNASAQFCGVAEMVGPVDYDKSVDYWKQDKWTGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEVELEQGNEMLNIFRNYESDSSILDDFDFYEDRQKAMQEKKTQHKASLLAAPMVVGSQQQIRRSLPTHLIHKMSKTFAQAVLLNENDKERSPAGKAVPGAARLRGSRVEPEKTRATMA* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21046882 21052994 - Vvi1g1256 Vvi1g1256 770456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1256 572 MobiDBLite consensus disorder prediction 290 304 - -
Vvi1g1256 572 Gene3D ph1033 like domains 308 483 - -
Vvi1g1256 572 PANTHER EVOLUTIONARILY CONSERVED C-TERMINAL REGION 5 15 559 - -
Vvi1g1256 572 ProSiteProfiles YTH domain profile. 331 468 IPR007275 GO:0003723
Vvi1g1256 572 MobiDBLite consensus disorder prediction 285 304 - -
Vvi1g1256 572 Pfam YT521-B-like domain 331 468 IPR007275 GO:0003723
Vvi1g1256 572 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 15 559 IPR045168 -
Vvi1g1256 572 MobiDBLite consensus disorder prediction 541 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1256 K20102 YTHDF; YTH domain-containing family protein - vvi:100248968 1167.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1256 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023703 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 3