Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1258 ATGATTTCTTTCTCAATGATGGAGTGGAATGCAAAAGCTCCCGTACAGTGGGACTGGGAGAACCTTGACATTTTCAATGCAAAATCAACTGAAATTCCAAAAAAGTTACAATCAGACTGGGAAATTGAAGGAGAAGGAGGAATTGACACTGGTTCTTTCTATTCATCTGGATGTGGTGCTGGTAGTGGTGGTTCTGGCTCTGATTTGGGACATGCATATTCATCAAAGAGCTCAAAATCAGCTTCAATTGATTCTTCATCAAAGATTTGGAGAGGGCTGAGGGCCAATGCTAAGGGCTCAGTGTTTTCTGTGATTCCCATATCATCTGATACCACAGCAAAGAGATCCAGGTTATCTTGTCAGAATGCACATGTCTCGCGCTGTCAAGTTGAAGGATGCAACCTTGACCTTTCAACAGCCAAAGATTACCATCGCAAACATAGAGTTTGTGAAAGTCATACCAAATGCCCAAAGGTCATTGTAGGTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGCAGGTTCCATAGTTTGTCAGAGTTTGATGAAAAAAAGAGAAGCTGTCGCAGGCGTCTTTCTGATCACAATGCACGCCGGCGCAAACCACAACCAGAAGGGATCCAGTCAAATTCGGCAAGGCTTTCATCATTCTATGGTGGGAAGCAGCAAATGAGTCTTGTGTTGAGCTCGGTCCCCATTGTTCATACAAGGCCTGCTGTAAATCCTTCATGGGAAGGCACATGCAGCAAGTTCACACAAACAAAAGGGTTAGTAAGGCCTGGTAACACAGGAGGTATCGACCGGCAGCTGCATTTGCCTGGCAGTGAACTGCAGAATGGCATTAGTACGCTTTGTCATGATTCCAGTAGGCTTTTGCACTCTAAGGGTGCAATAGCTGAGGTTCTCAATCAAGGTCTAGGGGATTCTATGATCTCTTCCAACTTGGACACATCACAGGATCTTCGTCGTGCTCTCTCTCTTCTGTCAACGAATTCTTGGGGCTCATGTGAAACACAACCAATTCCATCTGACCACCCTATGCATGTAAACCAAACCAGCATGCCTCAATCTATTATGCATGCAGTGTCCCAAGGTATGTTACATTCAACCTCAGAACACTGGAGGACCGAGCTTCCCTCAACTGATTCCCGGGTGCATATCTTGCCTTCACAAGGTGATGGTAACACCCACTTTCAAGAGTTCAAGCTGTTCAAAGCGCCATACGAGTCTGGCTTTTCTTCTGGTCAGTTGAACTGA 1257 45.58 MISFSMMEWNAKAPVQWDWENLDIFNAKSTEIPKKLQSDWEIEGEGGIDTGSFYSSGCGAGSGGSGSDLGHAYSSKSSKSASIDSSSKIWRGLRANAKGSVFSVIPISSDTTAKRSRLSCQNAHVSRCQVEGCNLDLSTAKDYHRKHRVCESHTKCPKVIVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQPEGIQSNSARLSSFYGGKQQMSLVLSSVPIVHTRPAVNPSWEGTCSKFTQTKGLVRPGNTGGIDRQLHLPGSELQNGISTLCHDSSRLLHSKGAIAEVLNQGLGDSMISSNLDTSQDLRRALSLLSTNSWGSCETQPIPSDHPMHVNQTSMPQSIMHAVSQGMLHSTSEHWRTELPSTDSRVHILPSQGDGNTHFQEFKLFKAPYESGFSSGQLN* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21064304 21071687 - Vvi1g1258 Vvi1g1258 770458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1258 418 ProSiteProfiles Zinc finger SBP-type profile. 125 202 IPR004333 GO:0003677
Vvi1g1258 418 SUPERFAMILY SBT domain 126 206 IPR036893 GO:0003677|GO:0005634
Vvi1g1258 418 Gene3D - 123 189 IPR036893 GO:0003677|GO:0005634
Vvi1g1258 418 MobiDBLite consensus disorder prediction 192 211 - -
Vvi1g1258 418 Pfam SBP domain 128 201 IPR004333 GO:0003677
Vvi1g1258 418 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 91 IPR044817 GO:0003677
Vvi1g1258 418 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 96 417 IPR044817 GO:0003677
Vvi1g1258 418 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 28 91 - -
Vvi1g1258 418 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 96 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1258 - - - vvi:100254075 664.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1258 Vvi17g97 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1258 . . . . . Bpe10g00763 . Bma15g00259 Cmo04g01939 . . Cma18g00688 . Car18g00638 . Cpe09g00597 Cpe01g01623 . . . . . . . . . . . . . . . . . . . . . . Blo06g00809 . . . . . . . . . . Cma04g01843 . Car04g01848 . . Cpe03g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014120 1 0 0 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 1 2 1 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14471 PF03110 SBP 3.70E-31 No_clan Vvi TF