Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1261 ATGCACGGACAAATTCATTGTGTCTCCCCTGTCCCAACACTGATAGGCTTATCTGAGATGATAATTCGACTCCAATTTTTTCCTCAAACTTTAATCCCTCTTCACTCTACTCTAAGCCCTGTTAAAAACCCTAACCGTAGCCCTAACTGTACAAAGCAATCTCAATTGCTCGATGGCTTCAGGAACTCACTTTCCCCTCATCCAAACACCCCCATTTCCGACTCCGGCCTCCGTTTCCGTCAAAAACTACTCTACATTGAAAATCTCAAAGTCAATTCCTCCAAAGCCCTCCATAAAAACCCTAATTTCCGATCAGCTCCTCTCGACACCGTGAAATCCGTTGAGAAATGCCTCTGCTCGATGGGCATTCAACGCTCTGCATTGGGTCGAATCTTGGACATGCACCCACAGCTCCTAACCAGTGACCCCTACAATGATCTTTATCCTGTATTTGATTTTCTATTTAACGAAGTGGTGAAAATGGTGGTGAGATCACCAGGATTGTTGACTTTCAGTATTGAGAAAAATTTTCAGCCTAAAGTGGAGTATTTCTTGGATGAGATGAAGGGGGATTTGGCAGAGCTAAAGAGATTTCCACAGTATTTTTCATTTAGTTTGGAGGGGAAGATAAAACCTCGGCATAGGCTTTTGGCCGAGCATGGGTTTTCGCTTCCATTGCCAGAGATGTTGAAGGTTAGTGATGGCGAGTTCAACTTGCGTTTGATCGAGATGCGATTGCAACTGGCTGACGAGAGATATTTGGACTGTGTCTCAGAAAATCAGGACGGTAACAAATGGAGGCATGACTTAACTAGACGGTGA 822 44.16 MHGQIHCVSPVPTLIGLSEMIIRLQFFPQTLIPLHSTLSPVKNPNRSPNCTKQSQLLDGFRNSLSPHPNTPISDSGLRFRQKLLYIENLKVNSSKALHKNPNFRSAPLDTVKSVEKCLCSMGIQRSALGRILDMHPQLLTSDPYNDLYPVFDFLFNEVVKMVVRSPGLLTFSIEKNFQPKVEYFLDEMKGDLAELKRFPQYFSFSLEGKIKPRHRLLAEHGFSLPLPEMLKVSDGEFNLRLIEMRLQLADERYLDCVSENQDGNKWRHDLTRR* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21096154 21107668 - Vvi1g1261 Vvi1g1261 770461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1261 273 Pfam mTERF 95 237 IPR003690 GO:0003690|GO:0006355
Vvi1g1261 273 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 156 250 - -
Vvi1g1261 273 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 62 158 - -
Vvi1g1261 273 PANTHER CGI-12 PROTEIN-RELATED 156 250 IPR003690 GO:0003690|GO:0006355
Vvi1g1261 273 PANTHER CGI-12 PROTEIN-RELATED 62 158 IPR003690 GO:0003690|GO:0006355
Vvi1g1261 273 SMART mt_12 159 191 IPR003690 GO:0003690|GO:0006355
Vvi1g1261 273 SMART mt_12 129 156 IPR003690 GO:0003690|GO:0006355
Vvi1g1261 273 SMART mt_12 94 124 IPR003690 GO:0003690|GO:0006355
Vvi1g1261 273 SMART mt_12 192 223 IPR003690 GO:0003690|GO:0006355
Vvi1g1261 273 Gene3D Transcription termination factor 3, mitochondrial 154 248 IPR038538 -
Vvi1g1261 273 Gene3D Transcription termination factor 3, mitochondrial 57 153 IPR038538 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1261 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - vvi:100247222 340.502
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012056 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14472 PF02536 mTERF 3.10E-25 No_clan Vvi TR