Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1262 ATGAGTGGTGGTTCATCTGCTGGGATGTCTAACTCTGCAAAGAGAAGAAGAGGCATGGATGATGTCTCCCACACTGAAATGCAGAATATACTGGTGGAGAAGGCTAGGAAGGAAATTCGAAATAAATTGAATGAATGGAACTCGGCTACTGTAACCAAAACTGCAGTAAAAGGGGTGGAGAATGGGAATGAGAAAGCAAATGAAAAAGAGGAAAAAATTGAAAAACCTTTAGCAAATGGCAATGTGCAAGATCAAAACAGGCCTGATATAGAGACCATTGAACCAATGTCAATTAATGTTCCTGATCCTGATTTTCATGATTTTGACAAGGATCGGACAGAAAGATGTTTTGGTGATAACCAGGTATGGGCTGCATATGATGATGATGATGGGATGCCTAGATATTATGCTATGATTCATAGTGTGATTTCCGTAAACCCATTCAAGATGCGTATTAGTTGGCTTAACTCAAAAACCAACAGTGAACTGGGCCCACTAAACTGGGTTGGTTCTGGTTTCTCAAAAACTTGTGGGGATTTCAGAGTTGGCAGATATGAAGGGGATGTGTGGGCTATCTATAGGAATTGGTCCCCTGACTGGAATGAGCTAACAGCAGATGAAGTAATACACAAGTATGATATGGTGGAAGTGCTTGAAGACTATGATGAAGAGCTAGGTGTAACTGTCACTCCCCTAGTTAAAGTTGCTGGCTTCAAGACAGTGTTTCACAGGCATTTGGACCCCAGAGAAGTCAGGAGGATACCAAGAGAGGAGATGTTTCGGTTCTCACATCATGTACCTTCATACTTGCTTACAGGTCAAGAAGCTCCAAGTGCTCCCAAGGGTTGCCGGGAGCTGGACCCTGCGGCTACTCCATTGGAACTTCTTCAGGTCATAACAGATGTTAGGGAAGAAGAGATTGTGGAAAATGACAAAATTAGGGAAGAAAATATAGTAAATAAGACCACAAAAGCTAATGAAAAAGAAATTGAAGAGAATTCAGAGAAAGCTACAGAAAAAGAGATTTCAGGGGATTCCAAAGATATGCAGGAGGTAGAAATTCTGGAGGTTGCCAAAGAAAAGCAAGACAAGAAAGCAAATTGTGGGTGCCCCCGGGTGATTGCTCTGTTTTTCGGCCGGAAGCGAAAGAGAGAGCGCGAATCGCCTGAGAATTCTCCGACGATCTTGTGCTTCGACATTTTCCGGCCACCGGATCTCACCGTAAACATGACAACATCAAGGCGTCTTGCAGATAGGAAGGTAGAGAAGTTTGAGAAGAACATCACTAAGAGGGGGTCTGTGCCTGAAACGACTACTAAGAAGGGAAGTGACTATCCTGTTGGGCCTGTTCTGCTTGGGTTCTTCGTCTTTGTTGTCATTGGATCTTCTCTGTTTCAGATAATCAGGACTGCAACCAGCGGTGGCGTGGCTTAA 1434 43.51 MSGGSSAGMSNSAKRRRGMDDVSHTEMQNILVEKARKEIRNKLNEWNSATVTKTAVKGVENGNEKANEKEEKIEKPLANGNVQDQNRPDIETIEPMSINVPDPDFHDFDKDRTERCFGDNQVWAAYDDDDGMPRYYAMIHSVISVNPFKMRISWLNSKTNSELGPLNWVGSGFSKTCGDFRVGRYEGDVWAIYRNWSPDWNELTADEVIHKYDMVEVLEDYDEELGVTVTPLVKVAGFKTVFHRHLDPREVRRIPREEMFRFSHHVPSYLLTGQEAPSAPKGCRELDPAATPLELLQVITDVREEEIVENDKIREENIVNKTTKANEKEIEENSEKATEKEISGDSKDMQEVEILEVAKEKQDKKANCGCPRVIALFFGRKRKRERESPENSPTILCFDIFRPPDLTVNMTTSRRLADRKVEKFEKNITKRGSVPETTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIRTATSGGVA* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21108239 21119819 - Vvi1g1262 Vvi1g1262 770462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1262 477 PANTHER BNAC03G44070D PROTEIN 9 297 - -
Vvi1g1262 477 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g1262 477 Pfam Ribosome associated membrane protein RAMP4 414 470 IPR010580 GO:0005783
Vvi1g1262 477 MobiDBLite consensus disorder prediction 326 347 - -
Vvi1g1262 477 PANTHER BNAA04G14940D PROTEIN 9 297 - -
Vvi1g1262 477 Pfam Domain of unknown function (DUF3444) 186 275 IPR024593 -
Vvi1g1262 477 Pfam Domain of unknown function (DUF3444) 95 184 IPR024593 -
Vvi1g1262 477 Coils Coil 320 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1262 - - - vvi:104877364 661.759
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1262 Vvi17g87 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1262 Blo01g00178 . . Bda11g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00192 . . Bda11g00390 Bpe14g00793 . . Bma06g01347 . . . . . . . Cpe17g01075 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004775 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 7 5 1 41