Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1264 ATGAGTTTTCTCCATGTGTTGGGGTTTGGTCTGAAGGTGGGACATCTCCTTTTGATGCTATGTTGCTGGATTATATCTGTGATCCCTGTGAACTGGTTCATTAATGGTGGAGTCATGGAAACCAAGGCTGGTTTACTTAGTGATGGTGGAAAGATATGGATGAGATTGTGGGAGAAGATGTTTGGGAACAGTGGTAAGATCCCCCATCACTGGTACCAGAAGTTTTGGTCCAAGAAGGTTGGAAAGACATGGTGGAGAAAGCTTTTGTTTACATGGGTTCTGATGTGGATCATGGTGTCTTTGTGGATCTTCTCGTATCTGAGCCTACAAGCTTCTGAAAAGAGGAAGGAAACCCTTGGAAGCATGTGTGATGAGAGGGCTAGGATGTTGCAGGATCAGTTTAATGTGAGTATGAACCATGTTCAGGCCATGTCCATTTTGATCTCAACCTTCCACCATGGCAAGAACCCATCTGCAATTGATCAGGGGACTTTTGCGAGGTACACTGAAAGAACTGCTTTCGAGAGGCCCCTCACAAGTGGCGTGGCATATGCGGTGAGGGTGCTCCACTCGGAAAGAGAACAATTCGAGAAGCAACAAGGGTGGACTATTAAGAGGATGGATACGCCTGAGCAAACGCCGGTTCACGAGGATAACCATGCCTCGGAGAACCTGGAGCCCTCCCCAGTTCAGGAAGAATATGCCCCTGTCATTTTTGCACAAGATACTGTCTCACATGTGATTTCGCTTGATATGCTGTCAGGAAAGGAAGATCGTGAAAATGTGTTGCGTGCAAGAGCATCAGGAAAAGCGGTTCTCACCGCTCCTTTCAGGCTATTCAAAACCAACAGCCTTGGAGTTATATTGACATTTGCTGTCTACAAGTCAGATCTCCTCTCAAATGCAACACCAAATGAGAGGATCCAAGCGACCCATGGGTATCTTGGTGGAGTCTTTCATATTGAATCACTCGTGGAGAAGTTACTTCAACAGCTTGCAAGCAAGCAAACTATCCTTGTCAATGTGTATGACACAACTGATACTGACCACCCAATCAGCATGTATGGTTCAAATGTATCGGATGATGGCTTACAGCATGTTAGCGCCCTTAACTTTGGGGACCCATTCAGAAAGCATGAGATGCGCTGCAGATTCAAACAAAAAGCACCATGGCCATGGCTAGCAATAACAACTTCAACTGGCATACTTGTAATTGCATTGCTTGTTGGGCATATATTCCATGCGACAGTGAACAGAATTGCTAAAGTCGAGGAGGATTACCGGGACATGATGATGCTCAAAAAGCGAGCAGAGGCAGCTGATGTTGCAAAATCTCAGTTCCTTGCCACTGTTTCTCATGAGATCAGAACCCCAATGAATGGTGTTCTCGGAATGTTACATATGCTTATAGACACGGATCTAGATGTAACTCAACAAGACTACGTGAGAACTGCACAGGCTAGTGGAAAAGCTCTAGTCTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAACTTGAGCTTGAGGAATTACAGTTTGATCTGCAGGCAATTTTGGATGATGTCTTGTCCCTCTTTTCTGGAAAATCTCAAGAAAAAGGAGTGGAGTTGGCAGTTTATATTTCTGATCGAGTTCCCAAAATGCTAATCGGTGATCCGGGGAGGTTTCGCCAAATCATCACCAATCTCATGGGAAACTCAATCAAATTTACAGAGAAAGGGCACATCTTTGTTACCATTCATCTTGTGGAGGAGTTGATGGATTCAATAGAAGTTGAGACAGAGTCATCATCTAAAAACACCTTAAGTGGTCTCCCTGTAGCAGATAGACGCTGCAGCTGGGAAGGATTCAGGACTTTCAATCAAGAGGGACTCACTAGTCCTTTCTCATCATCCTCCTCCGACCTCATCCATCTAATTGTATCAGTTGAGGATACAGGTGTAGGTATCCCTGAAGAAGCTCAATCTCGTGTTTTCACTCCCTTCATGCAGGTGGGTCCATCCATTTCTAGAATACATGGGGGCACAGGTATCGGGTTAAGCATAAGCAAATGTTTGGTTGGCCTTATGAATGGAGAAATCGGGTTTGTAAGTAGACCCAATGTTGGATCCACTTTCACTTTTACTGCTGTCTTCTCCGGTGGATGCTCCAAATCAAATGAGTACAAGTGCCAGCCAACTAACAACCAGTCTAATGCTGTCTCGTCAGAATTTCAGGGCATGGCAGCATTAGTTGTGGACCCCAACCCTGTACGGGCCAAGGTGTCAAGGTATCATATCCAGCGGCTGGGGATCCGTGTTGAAGTCACTTCAGATTTGAATCAAGTTTTCTCCAGCATAAGCAGTGGGAATACAGCTATCAACATGGTCCTAGTTGAACAGGACGTTTGGGATAAGGACTCAAACCTTTCTGCTCTCTTTGGTAATAAATTAAAGAAACTTGATCTGGAGGTTCCTCCTAAACTGTTTCTTCTAGCTAATTCCATCAGCTCTACCAGAAATAGTGCTGCAATTTCTGGGGTTTATAATCCAACTGTCATCATGAAGCCTCTGAGGGCCAGTATGCTGGCTGCATCTCTACAACGAGCCCTGGGTGTTGGGAACAAGGGGGTTTGCCAGAATGGAGAGCACCCCAGTTTGTCTCTCCGCAATCTTCTTCGTGGGAGAAAAATTCTAGTTGTGGATGACAATAATGTGAACCTCAGAGTAGCTGCTGGTGCATTGAAGAAGTACGGAGCTGATGTCGTCTGTGCAGACAGTGGGAAAAGTGCAATCCCACTGCTTAAACCTCCCCACGACTTTGATGCCTGTTTCATGGATATCCAGATGCCAGAAATGGACGGGTTTGAAGCTACTGGGATAATTAGGGAAATGGAACGGAACGTCAATAGTCGAATCCAACACGGAGAAGTTTCTGTGGAAGCTTATGCAAATATTTCGAACTGGCACCTACCCATTTTGGCCATGACTGCAGATGTCATCCAGGCCACACACGAGGAATGCCTGAGGTGCGGAATGGATGGATATGTATCAAAACCATTTGAAGCTGAACAACTTTATCGCGAGGTTTCACGCTTCTTTCAACCACCTCCAGAACAGAACCAATAG 3120 45.26 MSFLHVLGFGLKVGHLLLMLCCWIISVIPVNWFINGGVMETKAGLLSDGGKIWMRLWEKMFGNSGKIPHHWYQKFWSKKVGKTWWRKLLFTWVLMWIMVSLWIFSYLSLQASEKRKETLGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQGTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTPEQTPVHEDNHASENLEPSPVQEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKAVLTAPFRLFKTNSLGVILTFAVYKSDLLSNATPNERIQATHGYLGGVFHIESLVEKLLQQLASKQTILVNVYDTTDTDHPISMYGSNVSDDGLQHVSALNFGDPFRKHEMRCRFKQKAPWPWLAITTSTGILVIALLVGHIFHATVNRIAKVEEDYRDMMMLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLIDTDLDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVELAVYISDRVPKMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTIHLVEELMDSIEVETESSSKNTLSGLPVADRRCSWEGFRTFNQEGLTSPFSSSSSDLIHLIVSVEDTGVGIPEEAQSRVFTPFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRPNVGSTFTFTAVFSGGCSKSNEYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRYHIQRLGIRVEVTSDLNQVFSSISSGNTAINMVLVEQDVWDKDSNLSALFGNKLKKLDLEVPPKLFLLANSISSTRNSAAISGVYNPTVIMKPLRASMLAASLQRALGVGNKGVCQNGEHPSLSLRNLLRGRKILVVDDNNVNLRVAAGALKKYGADVVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQPPPEQNQ* 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21155197 21161393 + Vvi1g1264 Vvi1g1264 770464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1264 1039 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Vvi1g1264 1039 Pfam CHASE domain 159 355 IPR006189 -
Vvi1g1264 1039 PANTHER TWO-COMPONENT HISTIDINE KINASE 58 1032 - -
Vvi1g1264 1039 ProSiteProfiles Histidine kinase domain profile. 450 718 IPR005467 -
Vvi1g1264 1039 PANTHER HISTIDINE KINASE 3 58 1032 - -
Vvi1g1264 1039 Gene3D - 411 506 - -
Vvi1g1264 1039 CDD REC_hyHK_CKI1_RcsC-like 895 1027 - -
Vvi1g1264 1039 Gene3D - 507 717 IPR036890 -
Vvi1g1264 1039 Gene3D - 888 1033 - -
Vvi1g1264 1039 CDD PRTases_typeI 846 922 IPR000836 -
Vvi1g1264 1039 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Vvi1g1264 1039 Coils Coil 420 440 - -
Vvi1g1264 1039 ProSiteProfiles Response regulatory domain profile. 894 1031 IPR001789 GO:0000160
Vvi1g1264 1039 Pfam Response regulator receiver domain 895 1026 IPR001789 GO:0000160
Vvi1g1264 1039 SMART CHASE_2 156 357 IPR006189 -
Vvi1g1264 1039 PRINTS Bacterial sensor protein C-terminal signature 643 657 IPR004358 GO:0016310|GO:0016772
Vvi1g1264 1039 PRINTS Bacterial sensor protein C-terminal signature 678 696 IPR004358 GO:0016310|GO:0016772
Vvi1g1264 1039 PRINTS Bacterial sensor protein C-terminal signature 702 715 IPR004358 GO:0016310|GO:0016772
Vvi1g1264 1039 PRINTS Bacterial sensor protein C-terminal signature 661 671 IPR004358 GO:0016310|GO:0016772
Vvi1g1264 1039 Pfam His Kinase A (phospho-acceptor) domain 443 508 IPR003661 GO:0000155|GO:0007165
Vvi1g1264 1039 SUPERFAMILY CheY-like 890 1031 IPR011006 -
Vvi1g1264 1039 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Vvi1g1264 1039 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 430 509 IPR036097 GO:0000155|GO:0007165
Vvi1g1264 1039 CDD HATPase_EvgS-ArcB-TorS-like 560 716 - -
Vvi1g1264 1039 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 715 IPR003594 -
Vvi1g1264 1039 SMART HKATPase_4 555 718 IPR003594 -
Vvi1g1264 1039 Coils Coil 1038 1039 - -
Vvi1g1264 1039 Gene3D - 108 159 - -
Vvi1g1264 1039 SUPERFAMILY CheY-like 742 869 IPR011006 -
Vvi1g1264 1039 SMART REC_2 893 1027 IPR001789 GO:0000160
Vvi1g1264 1039 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 713 IPR036890 -
Vvi1g1264 1039 Gene3D CHASE domain 160 389 IPR042240 -
Vvi1g1264 1039 ProSiteProfiles Response regulatory domain profile. 746 868 IPR001789 GO:0000160
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14473 PF03924 CHASE 2.40E-38 CL0165 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1264 K14489 - vvi:100247122 2056.18