Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1270 ATGTCTGGCTTTGATTTTAACGATCTTTTAAAAGAAGCTCAAATCCGTTGGCTAAAGCCTGCTGAAGTGCTCTTTATTTTACAGAATTATGAGAAGCATCAGCTTACTCAAGAGCCTCCTCAGAAACCAACTAGTGGTTCTCTGTTTCTTTTTAATAAGAGAGTCCTTCGTTTTTTCCGTAAAGATGGTCATAGTTGGCGTAAGAAGAAGGATGGGAGGACTGTTGGGGAAGCACATGAGCGTCTCAAGGTTGGAACTGTTGAAACTATAAATTGTTATTATGCACATGGAGAACAGAATCCCAGTTTTCAAAGGCGTAGCTATTGGATGCTGGATCCGGCATATGAGCACATTGTTCTAGTTCATTATAGAGAGATAAGTGAGGGAAGGCACAGTCCTGGATCCAATTCACTGTTGTCATCAGGATCCACTCAAACTCAGAGTCCCAGCTCTTATAATTCTCAAATTCCAGGCTCTACGTCTGCAGTTAGTGAATTATATGATTCACCCCAAAATGTTTGCAGTCCAGGGTCTGTAGAAGTTAGTTCTGAGGTAGTAATGAAGAGTAATGTCAGAGAACACTTGGACCGGATAAATGGCATAGGAGATTTTGGTAATTCATCTGAGCTTGAGGTTAGTCAAGCATTGCGAAGGCTTGAGGAGCAGTTAAGTTTGAATGATGACAGCTTGGAAGCAATTGATGCATTTCAGAGTCAGAATGAGAATATGAATGGCTTGGAAACTCTAGAATATGAAAGGAAGATGTCTAAACAGGATCAGCATGCAGTTTTACTTAGTGGACCAGAATATACTGTACATGATCAACATTACACTGGATATGCTGGTTGTAGTACAGATGATCTTATGCTGCCACAAGATGCAGGTGACAACAGGGAACATTATCATCATCAATCTACAGTTGAAGGGAGAGACACCTTATCATGGGAAGAGATAATGGAGTTCTGCAAGAGTTCATCCGGTGTGGACTCAAAAGAGAAACACAAATCTTATGGAAATGAAAGACCACTTTCTTCTTCAGGGAGGGGAGCAGCTGAGAAGCAGCAAAACTCTCATTGGCTAAATGTTGATGGGACTAATTCTGAAAGTTCTTCTATATTGTTACCTTCAGAAGTTGAAAATTTGAACTTTCCTGAATATAAGACAAATACTCATGCTGTCAACTCAGACTACTACAGAATGTTGTTTGACGAAGGTCAGATTGAAGTGCCTCTAGAATCAGGTCCAAGTTTGACTCTTGCACAAAAACAGCGATTTACGATCTGTGAAATATCACCAGAATGGGGTTTTTCCAGTGAGACTACAAAGGTAATCATTGCAGGGTCTTTTCTCTGTCATCCATCAGAGTGTGCATGGACTTGTATGTTTGGTGACATTGAAGTTCCTGTTCAGATCATTCAGGAAGGTGTCATCTGTTGCCAGGCTCCTCCTCACCCTCCTGGAAAGGTCACTCTCTGCATTACTTCTGGAAATCGAGAGTCCTGCAGTGAGGTTAGAGAGTTTGAGTACCATGCTAAGACAAGTAGTTGTACTCACTGTAATTTATCCCAAACAGAAGCAACTAAGAGTCCAGAAGAACTGTTGTTACTTGCCAGATTTGTGCAGATGCTTCTGTTTGATCCATTGATGCACAGAAGAGATGGTATTGAATCTGGAATTGATCTATTGATAAAATCAAAAGCTGATGAAGATTCATGGGATTGTATTATAGAGGCACTTTTATTTGGCAGTGGGACTTCATCTAGTACTGTGGATTGGCTTCTGCAAGAGCTTCTGAAAGACAAGTTGCATCAGTGGCTTTCTTCCCGATCCCGGGAAGGATGCGAGTCATTTGGATGTTCCTTGTCCAAAAAAGAGCAAGGGATGATACACATGATTGCTGGGTTAGGCTTTGAGTGGGCCTTAAACCCAATTCTTAACACTGGAGTCAGCATAAATTTCCGTGACATTAATGGGTGGACTGCCCTTCATTGGGCAGCACGTTTTGGAAGGGAAAAAATGGTTGCTGCACTTATAGCTTCCGGTGCATCAGCTGGGGCAGTGACAGATCCCAGTCCACAAGATCCCACTGGTAAAACTGCAGCATCCATTGCTTCCACAAGCGGGCATAAGGGACTTGCTGGTTATCTTTCTGAGGTGGCAGTAACTAGTCATCTGTCATCCCTCACTCTGGAAGAAAGTGAGCTTTCAAAAGGGTCTGCTGAGGTGGAAGCAGAAATTACTGTAAATAATATCTCAAAAGGGGGCCTTGCTGCTAGTGAGGATCAGATTCCGCTTAAAGATGCCTTGGCTGCAGTTCGGAATACAACTCAGGCAGCTGCACGCATACAAGCTGCTTTCCGCGCACATTCTTTCAGGCAGAAGCAGCAGAGAGAAGCTGATGCTCCTTATGTAGATGAGTATGGTATCAGTTCAGATGACATTCAGGAACTTTCAGCAATGTCAAAGCTGGCCTTTCGCAATTCAGCTGCTTTATCTATCCAGAAAAAATATCGAGGTTGGAAAGGTCGTAAGGATTTCCTAACACTACGTCAGAAAGTTGTAAAGATACAGGCTCATGTGAGAGGATATCACGTTAGGAAGAATTACAAGGTGATCTGTTGGGCTGTTGGCATTCTAGACAAGGTTATACTGCGGTGGCGCCGAAGAGGAGCTGGTTTGCGAGGTTTTCGGCCTGAATCAGAGCCCATTGATGAAAATGAGGATGAAGACATTCGTAAGGCGTTCCGCAGGCAGAAAGTGGATGGAGCCATTAATGAGGCTGTATCAAGGGTGCTGTCCATGGTGGAGTCTCCCGAAGCACGTGAACAATATCACCGCGTGCTTGAAAGATTCCATCAAGCTAAGCAATCACATTTCAGACATGATTCAGCATTTGAGGCGGATTAG 2907 43.1 MSGFDFNDLLKEAQIRWLKPAEVLFILQNYEKHQLTQEPPQKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGTVETINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYREISEGRHSPGSNSLLSSGSTQTQSPSSYNSQIPGSTSAVSELYDSPQNVCSPGSVEVSSEVVMKSNVREHLDRINGIGDFGNSSELEVSQALRRLEEQLSLNDDSLEAIDAFQSQNENMNGLETLEYERKMSKQDQHAVLLSGPEYTVHDQHYTGYAGCSTDDLMLPQDAGDNREHYHHQSTVEGRDTLSWEEIMEFCKSSSGVDSKEKHKSYGNERPLSSSGRGAAEKQQNSHWLNVDGTNSESSSILLPSEVENLNFPEYKTNTHAVNSDYYRMLFDEGQIEVPLESGPSLTLAQKQRFTICEISPEWGFSSETTKVIIAGSFLCHPSECAWTCMFGDIEVPVQIIQEGVICCQAPPHPPGKVTLCITSGNRESCSEVREFEYHAKTSSCTHCNLSQTEATKSPEELLLLARFVQMLLFDPLMHRRDGIESGIDLLIKSKADEDSWDCIIEALLFGSGTSSSTVDWLLQELLKDKLHQWLSSRSREGCESFGCSLSKKEQGMIHMIAGLGFEWALNPILNTGVSINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSPQDPTGKTAASIASTSGHKGLAGYLSEVAVTSHLSSLTLEESELSKGSAEVEAEITVNNISKGGLAASEDQIPLKDALAAVRNTTQAAARIQAAFRAHSFRQKQQREADAPYVDEYGISSDDIQELSAMSKLAFRNSAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGYHVRKNYKVICWAVGILDKVILRWRRRGAGLRGFRPESEPIDENEDEDIRKAFRRQKVDGAINEAVSRVLSMVESPEAREQYHRVLERFHQAKQSHFRHDSAFEAD* 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21202169 21215480 - Vvi1g1270 Vvi1g1270 770470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1270 968 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 959 - -
Vvi1g1270 968 MobiDBLite consensus disorder prediction 684 703 - -
Vvi1g1270 968 Gene3D - 826 873 - -
Vvi1g1270 968 ProSiteProfiles Ankyrin repeat region circular profile. 657 683 - -
Vvi1g1270 968 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 959 - -
Vvi1g1270 968 Pfam IPT/TIG domain 427 509 IPR002909 -
Vvi1g1270 968 ProSiteProfiles IQ motif profile. 826 855 IPR000048 GO:0005515
Vvi1g1270 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 877 IPR027417 -
Vvi1g1270 968 SMART CG_1_2 9 127 IPR005559 GO:0003677
Vvi1g1270 968 SMART ANK_2a 657 686 IPR002110 GO:0005515
Vvi1g1270 968 MobiDBLite consensus disorder prediction 131 178 - -
Vvi1g1270 968 ProSiteProfiles IQ motif profile. 849 873 IPR000048 GO:0005515
Vvi1g1270 968 SUPERFAMILY E set domains 426 509 IPR014756 -
Vvi1g1270 968 ProSiteProfiles IQ motif profile. 775 801 IPR000048 GO:0005515
Vvi1g1270 968 MobiDBLite consensus disorder prediction 686 703 - -
Vvi1g1270 968 MobiDBLite consensus disorder prediction 326 364 - -
Vvi1g1270 968 SMART iq_5 848 870 IPR000048 GO:0005515
Vvi1g1270 968 SMART iq_5 774 796 IPR000048 GO:0005515
Vvi1g1270 968 SMART iq_5 825 847 IPR000048 GO:0005515
Vvi1g1270 968 Pfam IQ calmodulin-binding motif 851 870 IPR000048 GO:0005515
Vvi1g1270 968 Pfam IQ calmodulin-binding motif 828 846 IPR000048 GO:0005515
Vvi1g1270 968 MobiDBLite consensus disorder prediction 340 364 - -
Vvi1g1270 968 Pfam CG-1 domain 12 125 IPR005559 GO:0003677
Vvi1g1270 968 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Vvi1g1270 968 ProSiteProfiles CG-1 DNA-binding domain profile. 6 132 IPR005559 GO:0003677
Vvi1g1270 968 CDD IPT 426 510 - -
Vvi1g1270 968 Gene3D - 539 722 IPR036770 -
Vvi1g1270 968 Gene3D Immunoglobulins 420 515 IPR013783 -
Vvi1g1270 968 SUPERFAMILY Ankyrin repeat 626 719 IPR036770 -
Vvi1g1270 968 Pfam Ankyrin repeats (3 copies) 644 717 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1270 K21596 CAMTA; calmodulin-binding transcription activator - vvi:100260828 1853.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7randomg12 . 230 1239 CAMTA Transcription Factor Family AT2G22300 52.3 1.0e-253 873.6
Vvi1g1270 . 4 955 CAMTA Transcription Factor Family AT1G67310 52.4 2.0e-260 896.0
Vvi5g92 . 28 915 CAMTA Transcription Factor Family AT3G16940 54.4 6.2e-265 910.6
Vvi5g92 . 7 642 CAMTA Transcription Factor Family AT4G16150 51.8 6.7e-191 664.8
Vvi7randomg12 . 230 1239 CAMTA Transcription Factor Family AT2G22300 52.3 1.0e-253 873.6
Vvi1g1270 . 4 955 CAMTA Transcription Factor Family AT1G67310 52.4 2.0e-260 896.0
Vvi5g92 . 7 642 CAMTA Transcription Factor Family AT4G16150 51.8 6.7e-191 664.8
Vvi5g92 . 28 915 CAMTA Transcription Factor Family AT3G16940 54.4 6.2e-265 910.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14474 PF03859 CG-1 1.20E-48 No_clan Vvi TF