Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1272 ATGGGGAGAGGTAGGGTTGAGTTGAAGAGGATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAGAGAAGAAATGGCCTTCTCAAGAAGGCGTACGAACTTTCGGTGCTCTGCGACGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGAGACAAATGTATCCACAAGGGAGGCCCTGGAGTTAAGTAGTCAGCAGGAATATTTGAAACTTAAAGCACGTTATGAAGCCCTACAACGATCCCAGAGGAATCTTCTTGGGGAGGATCTTGGCCCTTTGAGCACGAAGGAACTTGAGTCACTGGAAAGGCAGCTTGATGTATCACTGAAGCAGATCAGGTCAACGCGAACACAGTACATGCTGGATCAACTCACCGATCTTCAGAGAAAGGAACACATGCTCAATGAAGCAAACAAGACCCTGAAGCAAAGGTTGTTGGAAGGAACACAGGTAAACCAGCTCCAGTGGAATCCAAATGCACAAGACGTGGGCTATGGTCGGCAACAAGCTCAGCCTCAGGGCGATGGCTTCTTCCATCCCTTAGAGTGTGAGCCCACGTTACAAATCGGATACCAGCCCGATCCAATAACGGTTGCAGCAGCAGGCCCCAGTGTGAATAACTACATGCCGGGATGGTTGCCATGA 729 49.25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSTKELESLERQLDVSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQRLLEGTQVNQLQWNPNAQDVGYGRQQAQPQGDGFFHPLECEPTLQIGYQPDPITVAAAGPSVNNYMPGWLP* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21368897 21386389 - Vvi1g1272 Vvi1g1272 770472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1272 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g1272 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g1272 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g1272 242 Coils Coil 126 146 - -
Vvi1g1272 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g1272 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi1g1272 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Vvi1g1272 242 Coils Coil 152 172 - -
Vvi1g1272 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g1272 242 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vvi1g1272 242 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vvi1g1272 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g1272 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Vvi1g1272 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g1272 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g1272 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1272 Vvi14g1150 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14475 PF01486 K-box 9.70E-27 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1272 - - vvi:100232869 483.026