Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1273 ATGGGCTATAATCTGAAGACGCCTTCTTGGGACTTAGCTGAATTGCAGAAAGAAGGCATACCCAGCGTTGCTCCCTTTCTTGGGTCGTCCAGTAGCTTAGGAGGAGGACAGGAGACTAAAGGGGATTGCTTGGTGGATTTGAAGCTTGGGAGGTTGAGTGATTTGGGGGACGGGTCAGTGAACAGTTTTAAAAGCTCTATGATGGAGTCATCATCGTCGGGGTCAGCAAAGAGGGCCAGGACACCAGGTCATGGAACCCAAGTTGTTTCATGCTTGGTTGATGGGTGCAAATCGGACCTCAGTAAATGTAGGGATTATCACCGTCGCCATAAAGTCTGTGAGCTCCACTCTAAAACCGCAAAGGTTACAATTGGGGGTCATGAACAACGGTTCTGCCAGCAGTGCAGCAGGTTTCATTCCTTGGGTGAGTTTGATGAAGGAAAAAGAAGCTGTAGGAAACGTCTTGATGGACACAACCGTCGCAGAAGGAAGCCTCAGCCTGAACCATTGTCCATAACTTCTGGGAGGTTTCTCTCCAGTCACCAAGGTACTCGATTGTTGGCATTCAGTAACCCACAAGTATTTCCTGCAAGCGCTGGTGTGACCTCTGCTTGGGCTGGGAATATCAAAACCGAGAATGATGCTGTACTTTACAATAGTCACCAACAGTTAAACTTCATGGACAGACAAAACTCATTCCCTGAATCCTTCTCCAGAAGCTATAGAGGAAAGCAGTTCCCATTCTTGCAAGGCCCTAATCCCACACTCCCTGGAACTTCTGTTTGTCAACCACTTCTTGATCCCATGATCAGTTCTGATCGTGCTCTCTCTCTTCTGTCATCGCCGCCACCTGAGACTCAGGAGATTGGTTTGAGCAGGATGGTGCAGCAAAACCCAATCCCCCCAGCTCAATCCTTGATCCCCAGCCTGCACTATACTGGTCTAAGCCAGTATGCTTCCTCCCAAGGAATGGGTGGGTCAGTCGGTTCTGTTTTGGTCTCTGATGGTAGCAGCAATGCCAACCTCCATTGCCCTGCAATTTTTCAGCTTGGACCTGATGGCTCGTCTACCAACAGTCCTCATCAAACGCTCTCGTTCTCTTGGGAGTATAATGTACTCTCTCTCTCAGAATTTATCCCTCCTGAACTGTGGAATTTCTCAGTTGACAATGAATTGGGGAGCAGGTTCTACTTATATATATATATATGGATTCCCTTTCTGGATCTCTTTTCTTCCCTATCTTCAAATTTATGGATGCTTTCATAG 1266 47.39 MGYNLKTPSWDLAELQKEGIPSVAPFLGSSSSLGGGQETKGDCLVDLKLGRLSDLGDGSVNSFKSSMMESSSSGSAKRARTPGHGTQVVSCLVDGCKSDLSKCRDYHRRHKVCELHSKTAKVTIGGHEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQPEPLSITSGRFLSSHQGTRLLAFSNPQVFPASAGVTSAWAGNIKTENDAVLYNSHQQLNFMDRQNSFPESFSRSYRGKQFPFLQGPNPTLPGTSVCQPLLDPMISSDRALSLLSSPPPETQEIGLSRMVQQNPIPPAQSLIPSLHYTGLSQYASSQGMGGSVGSVLVSDGSSNANLHCPAIFQLGPDGSSTNSPHQTLSFSWEYNVLSLSEFIPPELWNFSVDNELGSRFYLYIYIWIPFLDLFSSLSSNLWMLS* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21412775 21417820 - Vvi1g1273 Vvi1g1273 770473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1273 421 MobiDBLite consensus disorder prediction 155 175 - -
Vvi1g1273 421 Gene3D - 82 152 IPR036893 GO:0003677|GO:0005634
Vvi1g1273 421 SUPERFAMILY SBT domain 89 170 IPR036893 GO:0003677|GO:0005634
Vvi1g1273 421 ProSiteProfiles Zinc finger SBP-type profile. 88 165 IPR004333 GO:0003677
Vvi1g1273 421 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 271 369 - -
Vvi1g1273 421 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 7 267 - -
Vvi1g1273 421 Pfam SBP domain 91 164 IPR004333 GO:0003677
Vvi1g1273 421 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 271 369 IPR044817 GO:0003677
Vvi1g1273 421 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 267 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1273 - - - vvi:100243827 687.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1273 Vvi14g1148 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1273 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00193 Cam06g0016 Cec06g0214 Cco06g0208 Clacu06g0211 Cmu06g0204 Cre06g0977 . . . . . . Chy11g01795 Cme11g02326 . . . . . . . . Sed08g1495 . . . . . . Cpe17g01068 . Bhi12g02448 Tan06g1510 Cmetu11g0895 . Hepe03g1119 . . . . . . . . . Lsi09g01730 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14476 PF03110 SBP 8.80E-30 No_clan Vvi TF