Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g1275 | ATGGATAGCTTCTCCACTCTCTTTCCGTGCCCACCTTCAACTTCTTCTCCCTCTCCTTTCTCTTTTCTCTCCATGGTCAACAACAGTTCCCATCATGACTTCCAAACCCACAAGCCCAGTGATTTCCTTGGTTTGATGAGTGGCACCACCGCAACAGCTGCTTCAATGGAAGTTCCCGCCTCAGACATCACTAATGTCGATTCTCTCCAGGCCAAAGGCCTTCTTGGCTCCGATGACGGCGAAGTCAAGTCCTGCGGCAAGAAGAAGGGAGAGAAGAAGATTAGAAAGCCCCGATATGCTTTTCAAACCAGGAGCCAAGTAGATATTCTTGATGACGGTTACAGATGGAGGAAGTATGGGCAAAAAGCTGTCAAAAACAACAGGTTCCCAAGAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATGCATTCGCATCAGATCGAGAAATCTACTGATAACTTTGAGCATATCTTGAGCCAGATGCAAGTTTATGCTTCCTTTTAA | 570 | 46.32 | MDSFSTLFPCPPSTSSPSPFSFLSMVNNSSHHDFQTHKPSDFLGLMSGTTATAASMEVPASDITNVDSLQAKGLLGSDDGEVKSCGKKKGEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCNVKKQVQRLSKDEGIVVTTYEGMHSHQIEKSTDNFEHILSQMQVYASF* | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21460122 | 21461397 | - | Vvi1g1275 | Vvi1g1275 | 770475 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g1275 | 189 | PANTHER | WRKY TRANSCRIPTION FACTOR 75-RELATED | 48 | 185 | - | - | |
Vvi1g1275 | 189 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 48 | 185 | IPR044810 | GO:0003700 | |
Vvi1g1275 | 189 | SMART | WRKY_cls | 110 | 169 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi1g1275 | 189 | SUPERFAMILY | WRKY DNA-binding domain | 102 | 169 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi1g1275 | 189 | Gene3D | WRKY domain | 97 | 163 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi1g1275 | 189 | Pfam | WRKY DNA -binding domain | 111 | 168 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi1g1275 | 189 | ProSiteProfiles | WRKY domain profile. | 105 | 170 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi1g1275 | Vvi14g1147 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14477 | PF03106 | WRKY | 9.80E-26 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g1275 | - | - | vvi:100254080 | 343.199 |