Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1275 ATGGATAGCTTCTCCACTCTCTTTCCGTGCCCACCTTCAACTTCTTCTCCCTCTCCTTTCTCTTTTCTCTCCATGGTCAACAACAGTTCCCATCATGACTTCCAAACCCACAAGCCCAGTGATTTCCTTGGTTTGATGAGTGGCACCACCGCAACAGCTGCTTCAATGGAAGTTCCCGCCTCAGACATCACTAATGTCGATTCTCTCCAGGCCAAAGGCCTTCTTGGCTCCGATGACGGCGAAGTCAAGTCCTGCGGCAAGAAGAAGGGAGAGAAGAAGATTAGAAAGCCCCGATATGCTTTTCAAACCAGGAGCCAAGTAGATATTCTTGATGACGGTTACAGATGGAGGAAGTATGGGCAAAAAGCTGTCAAAAACAACAGGTTCCCAAGAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATGCATTCGCATCAGATCGAGAAATCTACTGATAACTTTGAGCATATCTTGAGCCAGATGCAAGTTTATGCTTCCTTTTAA 570 46.32 MDSFSTLFPCPPSTSSPSPFSFLSMVNNSSHHDFQTHKPSDFLGLMSGTTATAASMEVPASDITNVDSLQAKGLLGSDDGEVKSCGKKKGEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCNVKKQVQRLSKDEGIVVTTYEGMHSHQIEKSTDNFEHILSQMQVYASF* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21460122 21461397 - Vvi1g1275 Vvi1g1275 770475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1275 189 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 48 185 - -
Vvi1g1275 189 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 185 IPR044810 GO:0003700
Vvi1g1275 189 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g1275 189 SUPERFAMILY WRKY DNA-binding domain 102 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g1275 189 Gene3D WRKY domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g1275 189 Pfam WRKY DNA -binding domain 111 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g1275 189 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1275 Vvi14g1147 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14477 PF03106 WRKY 9.80E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1275 - - vvi:100254080 343.199