Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g128 ATGGGCCTGAGGCCGGAACTGAAGCCCATTAGCCCTTTTCCCTCTAGGGCTCTTCTGGGATCTTCATCGTCTACCAATTTCAAGGCCGCTGCCAACAAGGTCGACGATGAGTCCGAAGAAGAAGTAGAAATCGACCAAAGAAGGCTTCCAGCGGATTACGACCCGGCAAACTTCGACCCCACCCAGCACCGGAGCCCACCCACCGCCAGAGTCTTCAGGCTCGTTGACGAAATCGCCGGGCTCACGCTCGTCGAAGTGGCTGAGCTCTCCTCGATTCTAAGGAAGAAGCTGGGCATGAAGGAACCCCCAGTTGTTGCGATCATGAAACCTGGGGCGGTGGCTGCTGTTTCAGGCGGGGGAATGAAGGCGGCGTCGGCGGCCAAAGAGGAGAAGAAGCCGGAGAAGACTGTGTTCGAACTGAAGCTTGAATCATATGAGGCGGCTTCGAAGATCAAGATAATTAAGGAGGTTAGAAGTTTTACTGATTTGGGTCTCAAAGAAGCCAAGGATTTAGTGGAGAAGGCGCCGTCTGTACTGAAGGCTGGAGTGTCCAAGGAAGAGGGTGAGCAACTTGTGGAAAAATTAAAGGCTCTGGATAACCAAATACATAAGTTGGGATGGAGGGAAGTATCATCATCATCCTCCTTTTAA 651 52.23 MGLRPELKPISPFPSRALLGSSSSTNFKAAANKVDDESEEEVEIDQRRLPADYDPANFDPTQHRSPPTARVFRLVDEIAGLTLVEVAELSSILRKKLGMKEPPVVAIMKPGAVAAVSGGGMKAASAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKAPSVLKAGVSKEEGEQLVEKLKALDNQIHKLGWREVSSSSSF* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1245112 1248294 + Vvi1g128 Vvi1g128 769328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g128 216 MobiDBLite consensus disorder prediction 16 31 - -
Vvi1g128 216 PANTHER F20P5.9 PROTEIN 21 200 IPR015608 -
Vvi1g128 216 CDD Ribosomal_L7_L12 69 198 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 Gene3D - 135 203 IPR014719 -
Vvi1g128 216 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 73 114 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 Gene3D Single helix bin 72 134 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 PANTHER 39S RIBOSOMAL PROTEIN L12 21 200 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 SUPERFAMILY ClpS-like 134 198 IPR014719 -
Vvi1g128 216 Pfam Ribosomal protein L7/L12 dimerisation domain 74 115 IPR008932 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 Pfam Ribosomal protein L7/L12 C-terminal domain 138 198 IPR013823 GO:0003735|GO:0006412
Vvi1g128 216 Hamap 50S ribosomal protein L7/L12 [rplL]. 68 205 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g128 K02935 - vvi:100853425 288.115