Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g128 ATGGGCCTGAGGCCGGAACTGAAGCCCATTAGCCCTTTTCCCTCTAGGGCTCTTCTGGGATCTTCATCGTCTACCAATTTCAAGGCCGCTGCCAACAAGGTCGACGATGAGTCCGAAGAAGAAGTAGAAATCGACCAAAGAAGGCTTCCAGCGGATTACGACCCGGCAAACTTCGACCCCACCCAGCACCGGAGCCCACCCACCGCCAGAGTCTTCAGGCTCGTTGACGAAATCGCCGGGCTCACGCTCGTCGAAGTGGCTGAGCTCTCCTCGATTCTAAGGAAGAAGCTGGGCATGAAGGAACCCCCAGTTGTTGCGATCATGAAACCTGGGGCGGTGGCTGCTGTTTCAGGCGGGGGAATGAAGGCGGCGTCGGCGGCCAAAGAGGAGAAGAAGCCGGAGAAGACTGTGTTCGAACTGAAGCTTGAATCATATGAGGCGGCTTCGAAGATCAAGATAATTAAGGAGGTTAGAAGTTTTACTGATTTGGGTCTCAAAGAAGCCAAGGATTTAGTGGAGAAGGCGCCGTCTGTACTGAAGGCTGGAGTGTCCAAGGAAGAGGGTGAGCAACTTGTGGAAAAATTAAAGGCTCTGGATAACCAAATACATAAGTTGGGATGGAGGGAAGTATCATCATCATCCTCCTTTTAA 651 52.23 MGLRPELKPISPFPSRALLGSSSSTNFKAAANKVDDESEEEVEIDQRRLPADYDPANFDPTQHRSPPTARVFRLVDEIAGLTLVEVAELSSILRKKLGMKEPPVVAIMKPGAVAAVSGGGMKAASAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKAPSVLKAGVSKEEGEQLVEKLKALDNQIHKLGWREVSSSSSF* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1245112 1248294 + Vvi1g128 Vvi1g128 769328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g128 216 MobiDBLite consensus disorder prediction 16 31 - -
Vvi1g128 216 PANTHER F20P5.9 PROTEIN 21 200 IPR015608 -
Vvi1g128 216 CDD Ribosomal_L7_L12 69 198 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 Gene3D - 135 203 IPR014719 -
Vvi1g128 216 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 73 114 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 Gene3D Single helix bin 72 134 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 PANTHER 39S RIBOSOMAL PROTEIN L12 21 200 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 SUPERFAMILY ClpS-like 134 198 IPR014719 -
Vvi1g128 216 Pfam Ribosomal protein L7/L12 dimerisation domain 74 115 IPR008932 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 Pfam Ribosomal protein L7/L12 C-terminal domain 138 198 IPR013823 GO:0003735|GO:0006412
Vvi1g128 216 Hamap 50S ribosomal protein L7/L12 [rplL]. 68 205 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi1g128 216 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g128 K02935 RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12 - vvi:100853425 288.115
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g128 . . . . . . . . . Cmo18g00248 . . . . . Cpe09g00931 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007162 1 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 3 1 2 1 1 2 1 1 37