Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1282 ATGGCGATTGCTGTTCTTGGATTTTCCTGTAGAAGTTACCTCACTTTCCGTCGTCCTCTCGTCTACTGCGTTCACAAGGTTCGACACCGCAGCAATGTTGCAACTGTTGAATCGCCTCCTGAACCAGTGGGTGTTACGAAGGAAGAAGAACCTCATTGGGCTACTTCTGATGGAAGAGGTAATGGTGCTTCTAAGGCACCTGAATGGAAGAAGTTGAATTCTAAAGACCTCGGGATTAGGACGTCGATGATTGCAAAGCCCACAAGATATGTTTTAAATGGACTTAAAAAAAAAGGATATGAAGTGTACCTTGTTGGAGGTTGTGTACGGGACCTTATCCTGAAGAGAACTCCTAAAGACTTTGACATCATAACTTCAGCTGAACTTAAGGAGGTACTGAGAGCATTTCCCCGATGTGAAGTAGTTGGAAAGCGATTTCCCATATGCCATGTGCATGTCAATGATACCATTGTTGAGGTTTCAAGTTTTAGCACTTCTGGAAAGAGAACCGGTAGGAAACTTGATTATATTCTCAGAAGACCTCCTGATTGTGATGATCATGATTATATTCGCTGGAGGAATTGTCTACAGCGGGACTTTACTATTAATGGGTTGATGTTTGATCCTTACACAAAGATAGTGTATGACTATATGGGTGGGATGCAAGATATCAAAAAAGCTAAAGTACGGACTGTAATCCCTGCTAATATTTCTTTTGTGGAGGATTGCGCTCGCATTTTGCGTGGGGTTAGAATTGCAGCACGTTTAGGGTTTCGTTTCACTAAAGATATAGCTCATTCTGTAAGAGAGTTATCTTGCTCAGTGTTAAGACTTGATAAGGGAAGGATACTCATGGAAATGAATTACATGCTAGCTTATGGGTCCGCAGAAGCTTCCTTGAGGTTATTATGGAAATTTGGACTCCTGGAGATACTTCTACCCATACAAGCAGCATATCTTGTTTCCCAAGGTTTTCGAAGACGTGATCAGAGATCAAACATGCTTTTGTCTTTGTTTTCAAACCTGGATAGACTTGTGGCACCTGATCGGCCATGCCATAATAGCTTATGGATTGGTATGTTAGCATTTCATAAGGCCTTGGTTGACCAACCTCGGCACCCCATGGTTGTTGCAGCATTCAGCCTTGCTGTGCACAATGGTGGATCCTTGTCGGAAGCGGTGGAAATTGCAAGGAGAATCTCCCAACCTCATGACCAGAGCTTCAGTGAATTATTAGAACCTCAGGATCTAGACTCGGATGAATCCTTGATAGACGAGATCATGGATCTTGCAGCATCGGTGAAATCTGCATTGATGAAGATGACAGATGAACATTTTGTTTCCCAAGCAATGAGCAAATACCCACGAGCACCATACTCAGATCTGGTTTTTATCTCATTGGCATCATTCCTAAGAGCATCTAAGATCTTTCAGTGCGTACAAGGGGGTGCTGAGAAGGGATTCGTACCAAAACAAGGGAGTAGGATTGACTACGAATTCTTAGCATTGGGAAGCCTTCGTGAGGTTCGGCATGTGTTTGCAAGGATCGTTTTTGACACCGTTTACCCTCTAAGCCTCAACACAGAGGACAATTTTGTAAACCAAAATTCTTAG 1614 42.87 MAIAVLGFSCRSYLTFRRPLVYCVHKVRHRSNVATVESPPEPVGVTKEEEPHWATSDGRGNGASKAPEWKKLNSKDLGIRTSMIAKPTRYVLNGLKKKGYEVYLVGGCVRDLILKRTPKDFDIITSAELKEVLRAFPRCEVVGKRFPICHVHVNDTIVEVSSFSTSGKRTGRKLDYILRRPPDCDDHDYIRWRNCLQRDFTINGLMFDPYTKIVYDYMGGMQDIKKAKVRTVIPANISFVEDCARILRGVRIAARLGFRFTKDIAHSVRELSCSVLRLDKGRILMEMNYMLAYGSAEASLRLLWKFGLLEILLPIQAAYLVSQGFRRRDQRSNMLLSLFSNLDRLVAPDRPCHNSLWIGMLAFHKALVDQPRHPMVVAAFSLAVHNGGSLSEAVEIARRISQPHDQSFSELLEPQDLDSDESLIDEIMDLAASVKSALMKMTDEHFVSQAMSKYPRAPYSDLVFISLASFLRASKIFQCVQGGAEKGFVPKQGSRIDYEFLALGSLREVRHVFARIVFDTVYPLSLNTEDNFVNQNS* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21601486 21610278 + Vvi1g1282 Vvi1g1282 770482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1282 537 Pfam Poly A polymerase head domain 102 230 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi1g1282 537 Pfam Probable RNA and SrmB- binding site of polymerase A 257 319 IPR032828 -
Vvi1g1282 537 SUPERFAMILY Poly A polymerase C-terminal region-like 229 407 - -
Vvi1g1282 537 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 1 525 - -
Vvi1g1282 537 Gene3D Beta Polymerase, domain 2 83 230 IPR043519 -
Vvi1g1282 537 SUPERFAMILY Nucleotidyltransferase 77 226 IPR043519 -
Vvi1g1282 537 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 525 - -
Vvi1g1282 537 MobiDBLite consensus disorder prediction 35 67 - -
Vvi1g1282 537 CDD NT_ClassII-CCAase 86 226 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi1g1282 537 Gene3D - 231 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1282 - - - vvi:100259104 1075.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1282 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001666 2 13 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 3 2 1 3 1 69