Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1284 ATGACTGACGGACCTTCCACCACTGAACTTCCTCGTGGCTTAGGATCGCTGACGTGTACGGTCAAGATTCAGCTTCTTTCGTATCCTAGATTCGGACTGACTCCTCTTTATAAAACCCCTCTTTCCATTGCCTCAGTTTCACATAGGATGGGAATTGAAGATGTGGAGGAAGGTGAGATTTCTGATTCTGCTTCCGTAGAGGAGATCAGTGAGGAGGATTTTAATAAGCAGGAGGTTAGGGTTTTGAGAGAAGCGAAACCTAAGGCTGATACTAGGGTTTGGACGATGCGAGATCTGCAGGATCTGTATAAGTACCACCAGGCTTGCAGTGGTTACACTCCAAGATTGTACAATTTAGCCTGGGCACAGGCTGTTCAGAATAAACCTCTTAACGATATTTTTGTGATAATTGATGATAGTGGCGACGAAATGGATGTGAAGATGGATGATGTGAGTGAGAAAGAGGAAGGTGAATTGGAGGAGGGTGAGATTGATTTGGATTCGGAGCCAGATGTGAAAGATGAAGGAGGGGTTTTGGATGTTAATGAGCCTGAGATTGACCTGAAAGAGAGGGAATTGGTGGAGCGAGTGAAATCAATTCAGGAAGATCTTGAAAGTGTAACTGTGATTGAAGCGGAGAAATCATTTTCTGGGGTATGTTCCCGACTGCAGAACACTTTGGGAAGTTTGCAGAAAGTGTTTGGGGAGAAAGTGGTTGGGGAGAGCAGTGTTCCAACTAAAGATGCTCTCGCTCAACAATTGATTAATGCAATTCGAGCTCTTAATCATGTATTTTGTTCCATGAATTCTAACCAAAAGGAACTGAACAAGGATGTTTTCTCAAGGTTGCTTTCTTGTGTAGAGTGTGGAGATTCTCCTATTTTCTCCATTCAGCACATTAAAGAGGTAGAGGTCATGATGTCCTTTTTGGATACTCCTGCGGCTCAGTCAAGTGCTGAAGCTAGTGATAAGGTTAATGACGTCCAGGTCACTGATGGAATGAATCGGAACATTCTTGATAGTTCAGTTGAAAGTTCTGGGCGTGCTTTTGCTTCTGCAAAGAAATTTAGGGGGAGATTTATTTTTGGTCCCCTTCTAGATCTTCACAAAGATCATGATGAAGACAGCCTTCCATCACCCACTGGGAAAGCCCCACAATGTTTTCCTGTAAACAAGTCAGAATTGGTCACAGCTAAAGTGGCACATGAGACGCAAGATTCTATAATGCATCCTTATGAAACTGATGCTCTCAAAGCTGTTTCTACCTATCAACAGAAATTTGGGTTGACTTCATTCCTCCCAATTGACAAACTTCCTAGCCCAACCCCTTCAGAAGAATCTGGTGATACATATGGTGATATCAGTGGAGAGGTTTCTAGTTCTTCGACTATTAGTGCTCCCATAACTGCAAATGCACCTGCATTGGGTCATCCTATTGTCTCTTCTGCTCCTCAGATGGATATTGTGCAAGGACTAGTTGTCCCACGGAATACTGGAGCTGTGAATTCTAGGTTTAATTCCATTTTAAGAGCATCAGCAAAGAGTAGAGACCCTAGGCTTCGATTGGCGAGTTCTGATGCTGGATCTTTGGATCTCAATGAACGTCCCTTGCCTGCTGTGAGCAATTCTCCTAAAGTGGATCCCTTGGGAGAAATTGTAAGCTCAAGAAAGCAGAAATCTGCTGAGGAACCTCTTTTGGATGGTCCTGTAACAAAAAGGCAAAGAAATGGGTTGACAAGCCCTGCAACTAAATTGGAAAGTAAAGTGACTGTCACTGGTATTGGTTGTGATAAACCTTATGTAACAGTTAATGGAAATGAGCATTTGCCAGTGGTTGCTACTAGCACCACTGCTTCCTTGCAGTCTTTATTGAAAGATATTGCTGTGAATCCAGCCGTGTGGATGAATATATTTAATAAGGTGGAGCAACAGAAATCTGGTGACCCTGCAAAAAATACAGTGCTTCCTCCAACCTCAAATTCAATACTGGGAGTAGTTCCACCCGCAAGTGTTGCTCCACTAAAGCCATCAGCCCTTGGGCAGAAACCAGCAGGCGCACTTCAGGTTCCTCAAACTGGTCCAATGAATCCACAGGATGAGTCAGGAAAAGTCCGCATGAAACCTCGCGATCCTCGCCGTATTCTTCATGCCAATTCGTTTCAGAGGAGTGGGAGTTCTGGATCTGAGCAGTTCAAAACAAATGCCCAGAAGCAAGAGGATCAAACAGAGACGAAGTCTGTGCCTTCTCATTCTGTTAATCCCCCAGATATTTCTCAGCAATTCACCAAGAATCTGAAAAACATTGCTGATCTAATGTCTGCTTCCCAAGCATCGTCAATGACTCCAACTTTTCCGCAGATTCTTTCTTCCCAGTCAGTTCAAGTGAACACAGATAGGATGGATGTAAAAGCTACAGTTTCAGATTCTGGTGACCAGCTAACTGCAAATGGTTCGAAGCCTGAAAGTGCAGCAGGTCCCCCTCAATCAAAGAATACATGGGGGGATGTTGAACATCTATTTGATGGATATGATGACCAGCAAAAAGCTGCCATCCAGAGAGAGAGAGCAAGGAGGATAGAAGAACAGAAGAAAATGTTTTCTGCGCGCAAGCTCTGCCTCGTCTTGGATCTAGATCACACACTCCTTAATTCAGCCAAGTTTGTCGAAGTAGATCCAGTGCATGATGAGATCCTAAGAAAGAAGGAGGAACAGGATCGGGAGAAGTCACAGAGGCATCTCTTCCGTTTTCCTCATATGGGAATGTGGACCAAATTAAGGCCAGGGATCTGGAATTTCTTGGAGAAGGCTAGTAAGCTTTATGAGCTGCATCTTTACACAATGGGGAACAAGTTATATGCTACAGAGATGGCAAAAGTTCTTGATCCAAAAGGGGTTTTATTCGCTGGACGAGTGATCTCTAAGGGTGATGATGGGGATGTTTTAGATGGTGATGAGCGAGTCCCTAAGAGTAAGGATTTGGAAGGGGTATTGGGTATGGAATCAGCTGTGGTGATCATAGATGATTCTGTGAGAGTCTGGCCACATAACAAATTAAACTTGATAGTTGTGGAAAGGTACACTTATTTTCCATGTAGTAGACGCCAATTTGGGCTTCCTGGCCCGTCTCTTCTTGAGATTGATCACGATGAGAGACCAGAAGATGGGACTTTGGCATCCTCTTTGGCGGTTATTGAGAGGATACATCAGAGCTTTTTCTCTAATCGAGCCTTGGATGAGGTGGATGTCAGAAACATCCTAGCCTCAGAGCAGCGTAAAATTCTTGCTGGTTGTCGTATAGTCTTCAGCAGGGTGTTTCCTGTTGGGGAAGCCAACCCTCACCTACATCCTTTGTGGCAGACAGCTGAATCTTTTGGTGCCGTGTGCACCAACCAAATAGACGAACAGGTTACTCATGTAGTTGCCAATTCTCTTGGAACAGATAAGGTGAATTGGGCTCTTTCCACTGGAAGATTTGTGGTGCACCCTGGCTGGGTGGAAGCATCGGCTTTGCTATATCGAAGGGCCAATGAGCAAGATTTTGCCATTAAACCATAA 3555 44.22 MTDGPSTTELPRGLGSLTCTVKIQLLSYPRFGLTPLYKTPLSIASVSHRMGIEDVEEGEISDSASVEEISEEDFNKQEVRVLREAKPKADTRVWTMRDLQDLYKYHQACSGYTPRLYNLAWAQAVQNKPLNDIFVIIDDSGDEMDVKMDDVSEKEEGELEEGEIDLDSEPDVKDEGGVLDVNEPEIDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVPTKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKFRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKSELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMDIVQGLVVPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQSLLKDIAVNPAVWMNIFNKVEQQKSGDPAKNTVLPPTSNSILGVVPPASVAPLKPSALGQKPAGALQVPQTGPMNPQDESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKTNAQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQASSMTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANGSKPESAAGPPQSKNTWGDVEHLFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRALDEVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP* 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21626787 21633564 + Vvi1g1284 Vvi1g1284 770484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1284 1184 SUPERFAMILY HAD-like 860 1033 IPR036412 -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 718 758 - -
Vvi1g1284 1184 ProSiteProfiles FCP1 homology domain profile. 866 1046 IPR004274 -
Vvi1g1284 1184 CDD BRCT_CTDP1 1081 1177 - -
Vvi1g1284 1184 ProSiteProfiles BRCT domain profile. 1089 1182 IPR001357 -
Vvi1g1284 1184 SUPERFAMILY BRCT domain 1067 1183 IPR036420 -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 702 716 - -
Vvi1g1284 1184 PANTHER RNA POLYMERASE II CTD PHOSPHATASE 178 1184 IPR039189 GO:0008420|GO:0070940
Vvi1g1284 1184 Gene3D BRCT domain 1093 1182 IPR036420 -
Vvi1g1284 1184 TIGRFAM FCP1_euk: FCP1-like phosphatase, phosphatase domain 866 1029 IPR011947 GO:0004721|GO:0005634
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 805 836 - -
Vvi1g1284 1184 CDD HAD_FCP1-like 870 1023 - -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 805 829 - -
Vvi1g1284 1184 Pfam BRCA1 C Terminus (BRCT) domain 1091 1168 IPR001357 -
Vvi1g1284 1184 SMART BRCT_7 1091 1172 IPR001357 -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 674 758 - -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 437 462 - -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 443 462 - -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 152 178 - -
Vvi1g1284 1184 PANTHER RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3 178 1184 - -
Vvi1g1284 1184 Pfam NLI interacting factor-like phosphatase 871 1027 IPR004274 -
Vvi1g1284 1184 SMART forpap2 869 1033 IPR004274 -
Vvi1g1284 1184 Gene3D - 855 1092 IPR023214 -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 154 170 - -
Vvi1g1284 1184 MobiDBLite consensus disorder prediction 516 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1284 K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] - vvi:100243734 2130.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0657 Cone15ag0667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005044 3 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41