Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1287 ATGAGCTCTCTTCGGTGGAAAGCCATGGCAATAGCTGTAACTTTGCTTCTGCTCTGCTTTTCCAGAGAAGTTGAATCATCTCTCTCTTTGTCAGACAAAATTCTAGAGCTACCAGGTCAACCCCAAGTGGGGTTCCAGCAATATTCAGGCTATGTGGCTGTTGATGAGAAGCAGCAGAGAGCTTTGTTTTACTACTTCGCTGAAGCTGAAACAGATCCAGCTATCAAGCCTCTTGTTCTCTGGTTGAATGGAGGCCCTGGTTGTTCTTCTCTTGGGGTTGGGGCATTTTCTGAAAATGGGCCATTTAGGCCTAGTGGGGAGTTGCTGGTGAGAAATGAATACAGTTGGAACAGAGAGGCAAATATGTTGTATTTGGAGACACCAATAGGAGTTGGGTTCTCTTATTCAACTGATTCTTCCTCCTATGCGGCTGTAAATGACAAGATCACGGCCAGGGACAATCTGGTGTTCTTACAAAAATGGTTGCTCAAATTCCCACAATACAAGAACAGAGATTTATTCATCACAGGAGAAAGCTACGCTGGCCACTATGTTCCTCAACTTGCTGAGCTAATGCTCCAATTCAACAAGAAGGAGAAGTTGTTCAATCTAAAAGGAATTGCTCTGGGCAATCCAGTTTTGGAGTTTGCCACTGATCTCAACTCAAGGGCTGAGTTTTTCTGGTCTCATGGATTGATATCGGATTCCACATACAAAATGTTCACTTCCTTTTGTAATTATTCTCGGTATGTGAGTGAGTATTACAGAGGATCAGTTTCCTCAATCTGTTCAAGGGTGATGAGCCAAGTGGGGAGAGAAACCAGTAGATTTGTGGACAAGTATGATGTTACCCTTGATGTCTGTATATCATCTGTGCTCTCACAATCAAAAGTCCTTAGTCCCCAACAAGTAACCGAGACAATAGATGTCTGCGTGGAGGATGAAACCGAGAGTTATTTGAATAGGCGAGACGTGCAGAAGGCTCTCCATGCCCGGCTAGTAGGAGTCAACAAATGGTCTGTTTGTAGCAATATCTTGGACTATGAATTGCTTGACCTGGAGATACCCACAATTTCCATCGTGGGCAAGCTCATCAAGGCAGGGATTCCGGTTTTGGTTTATAGTGGCGATCAAGATTCTGTTATCCCATTAACGGGGAGCCGGACACTGGTCCATGGACTTGCTGAAGAATTAGGACTGAACACAACTGTGCCCTACAGAGTATGGTTTGAGGGGAAGCAGGTTGGTGGGTGGACACAAGTGTATGGTAACATTCTCTCCTTTGCCACCATTAGAGGAGCATCCCATGAAGCTCCATTCTCTCAGCCAGAGAGATCACTTGTTTTGTTCCGGGCATTTCTGGGTGGTAGGCCTCTACCACAAGCTTTCTGA 1392 45.11 MSSLRWKAMAIAVTLLLLCFSREVESSLSLSDKILELPGQPQVGFQQYSGYVAVDEKQQRALFYYFAEAETDPAIKPLVLWLNGGPGCSSLGVGAFSENGPFRPSGELLVRNEYSWNREANMLYLETPIGVGFSYSTDSSSYAAVNDKITARDNLVFLQKWLLKFPQYKNRDLFITGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDLNSRAEFFWSHGLISDSTYKMFTSFCNYSRYVSEYYRGSVSSICSRVMSQVGRETSRFVDKYDVTLDVCISSVLSQSKVLSPQQVTETIDVCVEDETESYLNRRDVQKALHARLVGVNKWSVCSNILDYELLDLEIPTISIVGKLIKAGIPVLVYSGDQDSVIPLTGSRTLVHGLAEELGLNTTVPYRVWFEGKQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFRAFLGGRPLPQAF* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21666019 21669215 + Vvi1g1287 Vvi1g1287 770487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1287 463 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Vvi1g1287 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vvi1g1287 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vvi1g1287 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vvi1g1287 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Vvi1g1287 463 Gene3D alpha/beta hydrolase 30 290 IPR029058 -
Vvi1g1287 463 Pfam Serine carboxypeptidase 38 455 IPR001563 GO:0004185|GO:0006508
Vvi1g1287 463 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 45 21 461 - -
Vvi1g1287 463 SUPERFAMILY alpha/beta-Hydrolases 36 460 IPR029058 -
Vvi1g1287 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 426 443 IPR033124 GO:0004185
Vvi1g1287 463 Gene3D - 358 456 - -
Vvi1g1287 463 Gene3D - 311 347 - -
Vvi1g1287 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 461 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1287 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - vvi:100255776 927.546
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0656 Cone15ag0666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126